Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00911 ATGATTGAGGGTGAATTTGGGGAATCATTGATTTTTGTGTTGTGGTTAGGATCTATTTTGGTGTATTTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGGTAATGGTGGTGGCAAAACCAGCGGCTTCATTCCTAGTTCTTTTCGTGCTCTTTCTAGCTACCTCAGGATTGTTTCCTCTGGTGCTTCCACAGTTGCACGTTCTGCTGCATCTGTTGTAGCTTCATCCGTTGTGGACAGAGATGACGTTCCCGACCATGATAAGGTTATTTGGGCTGGGTTTGACGAGTTAGAGGGTGAGGGTGAAGTTATTCAGCAAGTACTTCTTCTAGGCTATCGATCTGGCTTCCAGGTTTGGCATGTCGATGAATCAAATAATGTCCGTGACCTTGTATCCAGACTTGATGGTCCTGTTTCTTTTATGCAAATGGTACCTAATCCAATTGCATCAAAGAGATCTGAAGACAACTATGCAAACAGTCGGCAGCTGTTGGTTGTTTGTACTGATGGATTCTTTGTAGGAGGTAGCAATGTTCAGGATGGGTTGGCCACCCCTAATAATGGAAGCACTTTAAACTCACATGAACAAATGAATGGAAACTATTTGCCGACTACTGTTAGGTTTTATTCTATGAAATCTCAATCATATGTTCATGTGCTGAAGTTTAGATCAGTTGTTTATTCTGTGAGGTGCAGTTCTCGAGTAGTTGCTATCTCTCAGTCCACTCAGATTCACTGTTTTGAAGCTACCACATTAATAAGGGCGTATATTTTACTTACCAATCCTATAGTCATGAGTGTCCCTGGTTCTGGAGGCATAGGTTATGGTCCTCTTGCGGTGGGACCAAGATGGTTGGCATATAGCGGAAGTCCAGTTGCTGTTTCCAATTCAGGACATGTCAGCGGACAACATTTGATGCCTTCTGCAAGTGTTTCTGGTTTTTCTTCTAATGGCAGTTTGCTTGCTCATTATGCCAAAGAGTCCAGCAAGCATATTGCTACTGGTATTGTATCCCTCGGAGACATGGGGTATAAGAAACTTTCCAGATACTGCTCTGATACCAATGGTTCATTACAATCTGTAAATTCTGTCTCTAAGGGCACCGGAACCATTAATGGCCATTCAACGGATGCAGATAACATTGGGATGGTTATTGTTAAAGATATTGTCTCCAGAAACGTTATTGCTCAATTCCGGGCCCACAAGAGTCCTATTTCAGCATTAAGCTTTGATCCTAGTGGCACCATTTTAGTGACAGCTTCCATTCAGGGTCATAACATAAATGTTTTTAAGATCATGCCTGTACAGGACAATTTTTCTGCTTCTGATACTGGCCCCTCTTATGTTCATTTGTACAAGCTGCAACGTGGCTTTACAAATGCGGTTATTCAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATCAGTTCCTCTAGGGGCACTAGCCATCTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATTCAGTCCTATGATGATAGTTTTACTATAAGAAATAGTGGATTAGGCTCTACAGCTAATCACCCCCAGGGATGGTCTCATGGTTCTGCCATGCAAAAGCCTAAACAAAAGAGTTTGGTTGTGGCCGGCCCACCAATCACTCTTTCCGTGGTAAGCCGGATCAGGAATGGAGCCAATGGCTGGAGGGGCAGTGTAACTGGTGCTGCTGCTGCTGCAACTGGTAGGAAAACTCACCTTTCTGGGGCTGTAGCTTCATCTTTTCGGAAGTTTAAAAGTTCTGAAATGAACTATTCAAAGTATCACCTGCTGGTCTTTTCACCAACTGGTTCTATGATACAATATGCTCTGCAAATGTTAAGCAGTCAAGATTCAGGTGTTGGCTCTGTGTTGGCTCCTGCATATGAATCCCTTCCACAGGATGATGCAAGATTAGTAGTTGAGGCTATCCAAAAATGGAATATATGTCAGAGTCATAGTCGAAGAGAGCGAGAAGATAACATAGATATATATGGCGAGAATGGAATTGCAGATGCCAATAAAATATATCCGGAGGAAGTGGGGGAGGAGTACACCATTAGCCCGAAAGTCTGGAATGGAGCTATGAAAGTAAATCCTTCTCTTGAGGGGAAGAGTCATTTGTATATTTCAGAAGCTGAACTTCAAATGCATCAAGCTCAGACTTCATTATGGGCAAAACCAGAGATATATTTTCATTCAATGTTGCAAGAGCCTAACTTAATGGGTGAAGAAGCTGCTTCGAGTGGCGAATTTGAGATTGAAAGGATTCCTACATGCGTAGTTGAAGCTAGATCAAAAGACTTGGTTCCGATTTTTGACTATTTTCAGACTCCAAAGTTGCAGCAAGCAAGGACTTCTATGGATAGCAAAAAAGATGACCAACTGTCACATTACAGTTTGCAGTCATCTGGAAATGGCAGGATTTCTTCTAGGAGTGATGATGGTGATGTTTCTGAGTTAAGAAATGGGATTGAAGGAACTGAATTGGATAATCATGTGGTGGCTTCTGAAACTGTGAGCTTTGTAAATAACAATGACACCTTTAAACCAAATACTCAGCATGAGATTGTAAATAATAGAAGGGAGCACTTAGACACCGAGGCTCAACTCATGTTTGTAAATAGTGACAGAAAGCTTGAAAATGAAGAATCATTTTGA 2685 0.4182 MIEGEFGESLIFVLWLGSILVYLVMGMRNDAQKQQLLHQGNGGGKTSGFIPSSFRALSSYLRIVSSGASTVARSAASVVASSVVDRDDVPDHDKVIWAGFDELEGEGEVIQQVLLLGYRSGFQVWHVDESNNVRDLVSRLDGPVSFMQMVPNPIASKRSEDNYANSRQLLVVCTDGFFVGGSNVQDGLATPNNGSTLNSHEQMNGNYLPTTVRFYSMKSQSYVHVLKFRSVVYSVRCSSRVVAISQSTQIHCFEATTLIRAYILLTNPIVMSVPGSGGIGYGPLAVGPRWLAYSGSPVAVSNSGHVSGQHLMPSASVSGFSSNGSLLAHYAKESSKHIATGIVSLGDMGYKKLSRYCSDTNGSLQSVNSVSKGTGTINGHSTDADNIGMVIVKDIVSRNVIAQFRAHKSPISALSFDPSGTILVTASIQGHNINVFKIMPVQDNFSASDTGPSYVHLYKLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNIQSYDDSFTIRNSGLGSTANHPQGWSHGSAMQKPKQKSLVVAGPPITLSVVSRIRNGANGWRGSVTGAAAAATGRKTHLSGAVASSFRKFKSSEMNYSKYHLLVFSPTGSMIQYALQMLSSQDSGVGSVLAPAYESLPQDDARLVVEAIQKWNICQSHSRREREDNIDIYGENGIADANKIYPEEVGEEYTISPKVWNGAMKVNPSLEGKSHLYISEAELQMHQAQTSLWAKPEIYFHSMLQEPNLMGEEAASSGEFEIERIPTCVVEARSKDLVPIFDYFQTPKLQQARTSMDSKKDDQLSHYSLQSSGNGRISSRSDDGDVSELRNGIEGTELDNHVVASETVSFVNNNDTFKPNTQHEIVNNRREHLDTEAQLMFVNSDRKLENEESF 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00911 894 MobiDBLite consensus disorder prediction 805 820 - -
Vian11g00911 894 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 41 845 IPR045142 GO:0006914
Vian11g00911 894 MobiDBLite consensus disorder prediction 792 830 - -
Vian11g00911 894 Pfam Breast carcinoma amplified sequence 3 546 779 IPR022175 -
Vian11g00911 894 SMART WD40_4 397 437 IPR001680 GO:0005515
Vian11g00911 894 SMART WD40_4 453 494 IPR001680 GO:0005515
Vian11g00911 894 SUPERFAMILY WD40 repeat-like 120 496 IPR036322 GO:0005515
Vian11g00911 894 FunFam Breast carcinoma-amplified sequence 3 320 546 - -
Vian11g00911 894 Gene3D - 111 528 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00911 Vian-Chr11 10569640 10574681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00911 - - gmx:100784596 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00911 11 10569640 10574681 Vian11g00911 11 10569640 10574681 ECH
Vian11g00911 11 10569640 10574681 Vian5g00595 5 21586633 21591461 PCT