Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00594 ATGTTGCTACAGATATCACCCAGTTTGAGGCATGTCACTGTGCTTCCGGGAAAAGGGTTGAAGGAATTTATCAAAGTGAAGGTTGCATCAAGGAGGCTATCTTATCGGATGCTCTTCTATTCACTCTTGTTCTTCACATTCCTTCTTAGGTTTGTGTTTGTTCTGACAGCAGTGGATAACATTGATGGAGAAAACAAGTGTTCTTCCATAGGTTGCCTGGGAAAAAAATTGAGGCCAAAGATTTTGGGAAGAAGTCTTGAGTCAAATGTCCCAGAAGTAATATACAAAATATTAGACCAACCTCTTGGAAAAGATGAATTAGAGCAAAGGACTGATATACCTCAGACTTTAGAAGAGTTCATGGTCCTAATAAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTCAGAGAAATGGTGACCCTTATGGAACAAAGAACCAGAGAAGCCAAAATCCAAGAGTATTTATATCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCACTGCCTTGGCTTGAAGCTGGCCAATGAGCACACCAACAATGCAGCTGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCTCTGGTTGACAACAACTACTTTCACTATGTTCTTGCCTCCGACAATGTGCTCGCTGCCTCTGTGGTTGCAACATCACTTGTTCGCAACAGTTTGCAACCTCAGAAGGTTGTTCTGCACGTAATTACAGACAGAAAGACTTACTATCCCATGCAAGCTTGGTTCTCCTTGCACCCTTTATCACCTGCCATAATTGAAGTCAAGGCACTGCACCACTTCGATTGGTTTACAAAGGGAAAGGTGCCTGTGCTGGAAGCAATGGAAAAAGATCAAAATGTGAGATCACAGTTTCGAGGAGGATCATCAGCTATTGTTGCAAATACTACTGAGAAGCCTAGAGCAATTGCAGCAAAGCTGCAAACACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGCATACATCTTCCAGAGCTGTTCTCAAGCCTTAGCAAGGTGGTCTTCCTGGACGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGATATTGACATGAATGGAAAAGTCAATGGAGCAGTAGAAACATGCAGTGGAGAAGACAAGTATGTTATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCACACCCTTTAATATCCCAAAATTTTGATCCCAACGAATGTGCTTGGGCTTATGGCATGAACATTTTCGACCTTGATGCTTGGAGGAAGACCAATATAAGCTCTACATACCATTACTGGGTTGAGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGGACATTACCACCTGGATTAATAGCATTCCATGGTCATGTCCACAGTATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAAGTACAAGTTTTGCTGATGCTAAGGGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCTCATCTAAGGCCATTGTGGACTAAATACATTGACTTCTCAGATTACTTCATAAAGAGCTGCCATATCAAGGCATTGTAA 1602 0.422 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDNIDGENKCSSIGCLGKKLRPKILGRSLESNVPEVIYKILDQPLGKDELEQRTDIPQTLEEFMVLIKEGGYDAKTFAIKLREMVTLMEQRTREAKIQEYLYRHVASSSIPKQLHCLGLKLANEHTNNAAARLQLPSAELVPALVDNNYFHYVLASDNVLAASVVATSLVRNSLQPQKVVLHVITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSQFRGGSSAIVANTTEKPRAIAAKLQTLSPKYNSVMNHIRIHLPELFSSLSKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCSGEDKYVMSKRLKSYLNFSHPLISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHSIDPFWHMLGLGYQESTSFADAKGAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIKAL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00594 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Vian5g00594 533 CDD GT8_like_1 207 519 - -
Vian5g00594 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 82 530 IPR029993 GO:0047262
Vian5g00594 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Vian5g00594 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 203 522 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00594 Vian-Chr5 21535057 21537597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00594 1 532 Glycosyltransferase AT5G54690 79.026 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00594 K20867 - gmx:100777811 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00594 5 21535057 21537597 Vian5g00594 5 21535057 21537597 ECH
Vian11g00912 11 10590539 10593303 Vian5g00594 5 21535057 21537597 PCT