Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00912 ATGCAGCTGCACATATCTCCAAGTTTGAGGCATGTCACTGTGTTTCCAAGCAAAGGGTTCAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGCGTGTCTCTTATCGGATGCTCTTCTACTTTCTCTTGTTCTTCACTTTTCTTCTTCGGTTTGTGTTTGTCTTAACAGCAGTGGATGGCATTGATGGAGAAAACAAATGCTCTACCATAGGTTGCCTAGGAAAAAAACTAGGACCAAGGATTTTGGGGAGACAGTCTGCATCAACTGTCCCAGAAGTGATATACCAGACATTAGATGAACCTCTTGGCAAACATGAACTTCAGGGTAGGTTTGATATTCCACAAACCTTGGAAGAGTTCATGACTGAAATGAAGAAAGGTGGACATGATGCCAAGACATTTGCTGTTAAACTTCGAGAAATGGTGACCCTTATGGAAGAAAGGACCAGAATGGCGAAGATCCAAGAATATCTGTATCGACATGTAGCATCAAGCAGTATACCAAAACAACTTCACTGCCTTTCCTTGAGTTTAGCCAATGAACACACCAACAATGCCGCAGCACGCCTTCAACTACCCTCTGCAGAACTAGTCCCTGCCCTGGTTGACAATTCCTACTTCCATTTTGTCCTTGCCTCAGACAATGTACTGGCTGCATCAGTGGTTGCAACATCGCTTGTTCGCAATTTTTTGAGACCTCAGAAGGTTGTTCTGCACATAATTACAGACAGGAAGACTTATTACCCCATGCAGGCTTGGTTCTCATTGCATTCTTTGTCACCTGCTATAATTGAGGTGAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAGGTGCCTGTTCTGGAGGCTATGGAGAAGGATCAAAAGGTGAGGTCACAGTTTAGAGGGGGTTCATCAGCTATAGTTGCAAATACAACCGAGAAGCCAAAAGTTATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGTTGTTTCCAAGTCTTAACAAGGTTGTCTTCCTCGATGATGACATCGTGGTACAAACTGACCTTTCACCTCTTTGGGACATTGAAATGAATGGAAAAGTGAATGGAGCTGTAGAAACATGTACTGGAGAAGACAAGTTTGTGATGTCAAAGAAGTTGAAAAGCTATTTGAACTTCTCCCACCCTCTAATATCCAAAAATTTTAATCCCAATGAATGTGCCTGGGCCTATGGCATGAACGTTTTCGATTTGGAGGCTTGGCGGAAGACTAATATAAGCAATATTTACCATTACTGGGTTGAGCAGAATATCAAATCAGACCTGAGTTTGTGGCAGCTAGGAACATTACCTCCTGGATTGATAGCCTTTCATGGCTATGTCCACGTTATTGATCCTTTCTGGCATATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTGTTGATGCTGAGAGTGCTGGTGTCGTCCATTACAATGGCAGGGCAAAGCCATGGCTAGAAATAGCTTTTCCACAACTGAGGAAATTGTGGACAAAGTATGTTGACTTCTCAGATAAGTTCATCAAAAGTTGTCACATTAGGGCATCATAG 1602 0.4251 MQLHISPSLRHVTVFPSKGFKEFIKVKVASRRVSYRMLFYFLLFFTFLLRFVFVLTAVDGIDGENKCSTIGCLGKKLGPRILGRQSASTVPEVIYQTLDEPLGKHELQGRFDIPQTLEEFMTEMKKGGHDAKTFAVKLREMVTLMEERTRMAKIQEYLYRHVASSSIPKQLHCLSLSLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVRNFLRPQKVVLHIITDRKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCTGEDKFVMSKKLKSYLNFSHPLISKNFNPNECAWAYGMNVFDLEAWRKTNISNIYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGYVHVIDPFWHMLGLGYQENTSFVDAESAGVVHYNGRAKPWLEIAFPQLRKLWTKYVDFSDKFIKSCHIRAS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00912 533 CDD GT8_like_1 207 519 - -
Vian11g00912 533 Pfam Glycosyl transferase family 8 206 506 IPR002495 GO:0016757
Vian11g00912 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 527 IPR029044 -
Vian11g00912 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Vian11g00912 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 112 530 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00912 Vian-Chr11 10590539 10593303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00912 1 533 Glycosyltransferase AT5G54690 79.065 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00912 K20867 - gmx:100812550 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00912 11 10590539 10593303 Vian11g00912 11 10590539 10593303 ECH
Vian11g00912 11 10590539 10593303 Vian5g00594 5 21535057 21537597 PCT