LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g00928	ATGATGTTCCAATCATCAATCAATATCAAACACAAACTAAACCTGATTGATTCACTTCAACGTTTCAGTGCATCCTATCTTTTCCAACAAGAAATTAACAATCTATTGGAACAAATTCACCACAGTTTTATAAAAGATAACACCATCGTTGAAGATAATAATTATCACTCTCTTGCTCTACTATTTCGTTTGATTAGACAACAGGGATATCGAATTTCATCAGGCAATGATGTTGAAGGGCTGTGTAGCTTGTATGAAGCTGCACAAATGAAAACTCATGGAGATGATATACTAGAAGATATGTGTGACTTCTCAGAGACTCATCTTAAATCCTTGGTCACCCAACTGGAACCATCTCTTGTTGCACAAGTCAACCATTGCTTAAACCACCCTCTTAATAAGAGTGTGACTAGGTTTGAGGCAAAGTATCACATCTCTGTGTATGAAAAAGATTGCTCCCATGATGAAACTTTGTTGACATTTGCAAAAGTGAAATTCAATATTCTTCAACGATTACATCAAACAGAAATTGGGTCTATCACCAAGTGGTGGAAAAAGTCAAACTTTGAGCAAAAGGTTCCTCACGCTAGAAACAGAATTGTTGAGTGTTATCTTTGGTTGTTGGCTATGTCGCACCTGCCTGAATATAGTAATGGAAGAATCATTGTGGGAAAATTGGCTTCTGTTATTGCTCTTCTAGATGATACTTATGACGCTTATGGAACTTTTGAGGAACTTCAACTCTTTACAGAAGCATTTCAGAGATGGGATATCAGACTCACCGAATCCCTTCCACAGTCCATGAAAGTAATATTTGAAGCAATTATAGAACTGTGTGAAGAAGTAGAAGAGTTGACAACTGAGAGTGGAAACTCCAACTTTGTTGTGCCACATTTCAAACAAGCTATTTGCAGCTTAGTAAAAGGTTACCTGGTTGAAGCTAAATGGTGCGATGAGGGATACATTCCAACTTATGATGAATATAAAATCAATGGAATGTTTACTTCCTGTTGTCCCATTTTGTCTACAACGTTTGTTGGCCTTGCAAACTTTGCAACAAAAGATGTATATGATTGGATTTTGAGTAATCCACATATACTTAGAGCTGCATCAGTTATTGCTAGAGTCTTCAATGACATGGCCTCACATAGGTTTGAACAAGAAAGAGTACATGTTGCATCAGCTGTTGAATGTTGCATGAAGGAATATGGTATTCCGCAAGTAGACGCGTATAAGTTCATTCACAAGGACATTGATGATTGTTGGAATGTTGTAAATGAAGAGTTCCTCAAATCAAATGATATCCCAAATATTGCACTTGATTGTATAGCTAATTTTGCACGCATGGCTGAGTTTTCGTATGAAAATCACAATGATAAATTCACTGATGGAGAATTACTCAAAGATTATGTATCTTCAATTCTTGTGGATCCCTTCTGTCTCGATCAAACCGTGATATGA	1461	0.3669	MMFQSSINIKHKLNLIDSLQRFSASYLFQQEINNLLEQIHHSFIKDNTIVEDNNYHSLALLFRLIRQQGYRISSGNDVEGLCSLYEAAQMKTHGDDILEDMCDFSETHLKSLVTQLEPSLVAQVNHCLNHPLNKSVTRFEAKYHISVYEKDCSHDETLLTFAKVKFNILQRLHQTEIGSITKWWKKSNFEQKVPHARNRIVECYLWLLAMSHLPEYSNGRIIVGKLASVIALLDDTYDAYGTFEELQLFTEAFQRWDIRLTESLPQSMKVIFEAIIELCEEVEELTTESGNSNFVVPHFKQAICSLVKGYLVEAKWCDEGYIPTYDEYKINGMFTSCCPILSTTFVGLANFATKDVYDWILSNPHILRAASVIARVFNDMASHRFEQERVHVASAVECCMKEYGIPQVDAYKFIHKDIDDCWNVVNEEFLKSNDIPNIALDCIANFARMAEFSYENHNDKFTDGELLKDYVSSILVDPFCLDQTVI	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian11g00928	486	CDD	Terpene_cyclase_plant_C1	1	478	IPR044814	GO:0010333\|GO:0016102
	Vian11g00928	486	Gene3D	-	75	168	IPR036965	GO:0010333\|GO:0016829
	Vian11g00928	486	SFLD	Isoprenoid Synthase Type I	155	479	-	-
	Vian11g00928	486	Gene3D	-	1	74	IPR036965	GO:0010333\|GO:0016829
	Vian11g00928	486	PANTHER	OS04G0344100 PROTEIN-RELATED	8	462	-	-
	Vian11g00928	486	Pfam	Terpene synthase, N-terminal domain	6	128	IPR001906	GO:0010333\|GO:0016829
	Vian11g00928	486	SUPERFAMILY	Terpenoid synthases	154	479	IPR008949	-
	Vian11g00928	486	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	2	153	IPR008930	-
	Vian11g00928	486	FunFam	Isoprene synthase, chloroplastic	132	469	-	-
	Vian11g00928	486	Gene3D	Farnesyl Diphosphate Synthase	169	482	IPR008949	-
	Vian11g00928	486	Pfam	Terpene synthase family, metal binding domain	159	423	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Vian11g00928	486	SFLD	Terpene Cyclase Like 1 C Terminal Domain	155	479	IPR034741	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g00928	Vian-Chr11	10894879	10897060	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g00928	K15803		-	gmx:100781367	675.626

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian11g00928	11	10894879	10897060	Vian11g00928	11	10894879	10897060	ECH
	Vian11g00928	11	10894879	10897060	Vian5g00577	5	20723625	20735713	PCT