Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02139 ATGGCTCTTCTCAGTCGAGCCTCCTCACGCATCTATCAATTGCACTCCCATCAACGGGCGTTATCCCTCCACACCACGCTCCCAGCTCTCAACGCATCCACATCAACACACACGCCCACACCATATGCTCCGCCACCGCCTCCGTCCGCTTCATCTCCCGTCGGCGTTTCCAAGGCGGCGGAGTTCGTCATCTCCAAGGTAGACGATCTGATGAACTGGGCTCGCCGTGGCTCCATCTGGCCTATGACCTTCGGACTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGCGCCGCCCGCTATGATCTCGATCGCTTCGGCATCATTTTCAGGCCCAGCCCTCGCCAGTCTGACTGTATGATCGTCGCAGGCACTCTCACCAACAAGATGGCTCCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAACCTAGATGGGTCATTTCAATGGGAAGTTGTGCTAACGGCGGAGGATATTACCATTACTCTTACTCAGTGGTTCGAGGGTGTGACAGGATTGTTCCTGTTGACATATACATTCCAGGCTGTCCTCCAACTGCTGAGGCTTTGCTGTATGGACTCCTCCAGCTGCAGAAAAAGATCAATAGGCGCAAAGATTTCCTCCATTGGTGGACAAAGTAA 642 0.5452 MALLSRASSRIYQLHSHQRALSLHTTLPALNASTSTHTPTPYAPPPPPSASSPVGVSKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02139 213 Gene3D - 59 213 - -
Vian4g02139 213 FunFam NADH-quinone oxidoreductase subunit B 2 54 213 - -
Vian4g02139 213 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 169 185 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vian4g02139 213 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 88 197 IPR006137 GO:0051536
Vian4g02139 213 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 54 202 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vian4g02139 213 SUPERFAMILY HydA/Nqo6-like 61 205 - -
Vian4g02139 213 PANTHER NADH DEHYDROGENASE 57 212 - -
Vian4g02139 213 NCBIfam NADH-quinone oxidoreductase subunit B 62 203 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vian4g02139 213 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02139 Vian-Chr4 38230569 38233236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02139 K03940 - gmx:100802267 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02139 4 38230569 38233236 Vian4g02139 4 38230569 38233236 ECH
Vian7g00607 7 13970782 13971540 Vian4g02139 4 38230569 38233236 PCT