Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02046 ATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGTTGTGCAGCTGAGTATCTTGAGATGACTGAGGATGTTGATAGAAGAAACTTGGTTTTAAAGATTGAGGTGTTTCTTAACTCAAGTATCTTCCGCTGCTGGAAGGATTCTATCATTGTTCTCCAAACTTCTAAATCTCTTCTGCCATGGTCTGAGGATCTGAAGATCATTGGGAGATGCATAGACTCCATAGCTTCTAAAACTAGTGTGGACCCAGCATACATCACTTGGTCTTACACTTACAATAGGAAATTAGCTGAACCTGATAAAATTGTTGAGGACAAGATGACATTTCTAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGGAAGAATGGATGGTCTTGTTATTGGGGAGGCACTAAAAACCTATGCCTTAAGATGGATACCTGATTCTGTGGATACATTAGTTTCTGGTGCCAATGCCTCAAGGACTAAATCTGTGGTAGAAACAATTGTCTGTCTATTGCCATATGATAATGGCATTGGTTGTTCGTGTAGTTTCTTACTGAAGCTATTGAGAGTGGCCATATTAGTCTCTGCAAATGAGTCATCAACAAAAGAATTGATGAAGAGCATCAGCCTTAAATTGCATGAAGCTTGTGTCAAAGATTTATTGATTCCAGTAAGGTCTCCCCAGACTACTACATATGATGTTCATTTGGTACAAGGTCTTTTGAATCAATACATGAATGACAAAAAAGGAAGCTGTGGCATGGAGGTTGTTGAGGAGAAACATGGAGAAGATGAATATACTTTAGCACGAAGGTCTTTATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGCCTCTCTAGTTTTGCTGATTTGGCACAATCCATTCCAGGTTTCGCTAGACCAGATCATGATGGTCTATACAGAGCTATAGACATCTACTTGAAGGAGCACCCAGAATTGACAAAAGCCGAAAGGAAGAAACTATGTGGACTGATGGATGTCAGAAAATTGACTGCAGATGCTTCCATGCATGCTGCACAGAATGAATACCTTCCCCTTCGAGTTGTAGTCCAAGTTCTCTTCTTTGATCAGGTAAGGTCTTCTATCAGCTTTCAATCACTCGGCCACAATAGCACGTATGACCCTTCAAGCTCTCCAATGAATCGAGATGAGGGGTGTAAGAAAATGATGGAAGATAGCTGCCAACCCCTCAATAACCAGATGAGCCATTTGAGGATCAAGGATGAAGAGTTGCATAAAAATGGGAAATTAGGTAAGAAGAATGGCAAAAACAGCAAAAGTGGCCTTCAGTTGCTGCCGTCAAGATCAAGGAGAATTTTTGACAAGTTATGGAGTGTGAGAAAAGTACTAGGAGAGAATAGGAGCTCGGACACTTCAGGGAGTTCTAGTAGCCCAACTTCTTTAGGCCATGGTGACACCAAATCATGTAGCCTCTCTTTGAGACACCAGAGGCATTCCATCTCTTAG 1581 0.4092 MTVTLNAYNVVAARCAAEYLEMTEDVDRRNLVLKIEVFLNSSIFRCWKDSIIVLQTSKSLLPWSEDLKIIGRCIDSIASKTSVDPAYITWSYTYNRKLAEPDKIVEDKMTFLEKIESVPKDWWVEDICELDIDLYKRVMVAVKSKGRMDGLVIGEALKTYALRWIPDSVDTLVSGANASRTKSVVETIVCLLPYDNGIGCSCSFLLKLLRVAILVSANESSTKELMKSISLKLHEACVKDLLIPVRSPQTTTYDVHLVQGLLNQYMNDKKGSCGMEVVEEKHGEDEYTLARRSLLNVGKLVDGYLGEIAHDPNLGLSSFADLAQSIPGFARPDHDGLYRAIDIYLKEHPELTKAERKKLCGLMDVRKLTADASMHAAQNEYLPLRVVVQVLFFDQVRSSISFQSLGHNSTYDPSSSPMNRDEGCKKMMEDSCQPLNNQMSHLRIKDEELHKNGKLGKKNGKNSKSGLQLLPSRSRRIFDKLWSVRKVLGENRSSDTSGSSSSPTSLGHGDTKSCSLSLRHQRHSIS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02046 526 ProSiteProfiles NPH3 domain profile. 121 397 IPR027356 -
Vian4g02046 526 MobiDBLite consensus disorder prediction 404 425 - -
Vian4g02046 526 MobiDBLite consensus disorder prediction 490 526 - -
Vian4g02046 526 Pfam NPH3 family 121 373 IPR027356 -
Vian4g02046 526 PANTHER OS12G0117600 PROTEIN 1 481 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02046 Vian-Chr4 37286770 37288691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g02046 3 396 EF-hand Containing Proteins AT3G44820 33.571 2.60e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02046 - - gmx:100812575 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00521 7 12771794 12775426 Vian4g02046 4 37286770 37288691 PCT