Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g02021 ATGCTGCGTAAGCTTGTCTCAGGGCCACCCAAGAACAAGCCCGGCACCGTCCCCGTTCACCTCAACGTCTATGATCTCACCCCAATCAATGGCTATGCCTATTGGCTTGGCCTTGGTGTCTACCATTCTGGGGTTCAAGTTCACGGTGTTGAGTACGGTTTTGGTGCACATGAGCATGACACAACGGGGATTTTTGAAGTGCAACCGAAACACTGTCCTGGGTTCACTTTCAGAAAGTCGATTTTCATCGGAACAACAGATCTGGGTCAGAAAGATGTTCGGGCGTTCATGGAGAAACTGGCTCAGGAGTACTCTGGCAACACCTATCATCTCATCTCCAAAAACTGCAACCACTTCTGTAACGATGTTTGCCTCAAGTTAACGGGAAAGTCAATCCCTCGATGGGTCAATCGCCTTGCTCGACTTGGTCTTCTTTGCAACTGCGTTCTTCCCCCTGGGCTAAATGACACGAAGGTTCCACAAGCTACATCAGAGAGAGTTCAGGAGGGAGAAAAGAGGAAAATAAGAAGTCAATCCTGCAGGTACGAGGGTTCTTCGAATCCTTCATTGTCACGACGTTCGGCAATTAAAAGTAGTAGCCAAAGACATTGTCTTCCAGGATCTACATCTTTGCTTAATGCTACTCCAGCCTCAACCTTAACAGTGAAGTAG 672 0.4792 MLRKLVSGPPKNKPGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSIFIGTTDLGQKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQATSERVQEGEKRKIRSQSCRYEGSSNPSLSRRSAIKSSSQRHCLPGSTSLLNATPASTLTVK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g02021 223 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Vian4g02021 223 Gene3D PPPDE domains 12 172 IPR042266 -
Vian4g02021 223 MobiDBLite consensus disorder prediction 159 209 - -
Vian4g02021 223 MobiDBLite consensus disorder prediction 165 179 - -
Vian4g02021 223 PANTHER DESUMOYLATING ISOPEPTIDASE 16 197 IPR008580 GO:0008233
Vian4g02021 223 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Vian4g02021 223 MobiDBLite consensus disorder prediction 180 209 - -
Vian4g02021 223 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g02021 Vian-Chr4 36866365 36867978 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g02021 K22763 - gmx:100306675 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00466 7 11827662 11833942 Vian4g02021 4 36866365 36867978 PCT