Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01998 ATGCATTCCTTTTCCACTCTCCGGAGATTCTCTCCGTTCACCCAACGCTTCCGTACGCTGAGTTCTTCCTCTTCGCAGTCTTCATCTTCTCCCAGTCCTCGTCGCAATCCCAGTTGGGCTTCGGGTTCAGCCATTATTGCAGGCGTAGCCTCTGCTCTTGCTCTTTTCTATTGCTACAACTCACCCACTTCACCCTTCCATTCCGTTTTCTTGAATAATATCCCTCGCGGTTCTTCACTGCCATTCTTTGGAAGATCACCCGTTCCTGAAACTGCTAATGGTTTGCTTGTTCGAGATGCGTACAGAGCCAAGGTTTTCTTCTACTATGAGAAGCGCCTGCGGTTGCATAGTTCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACCCCAGAAGGAGAGATACTCATGAAGCCTTCGGACCTAATGCGAGCAGTTGTTCCTGTTTTTCCTCCATCAGAATCCAACCTAGTAAGAGAGGGATACTTGAAAGGTGAAAGAGATCCTGGCCATTTGTGGTGTCCCCCTTCGGATTTTTTTATGCTTTTTGATGTAGACAACGATGGACTTATATCCTTTAAAGAGTATATGTTTTTCGTAACTCTGCTTAGCCTCCCAGAATCAAGCTTCTCGGCAGTATTTAAAATGTTTGACAGAGATAATGACGGAGAGATAGACAAGGAAGAATTCAAGAAAGTCATGCAATCAATGCGATCGCATACCAGATTGGGTGTTCACCATGGGGATGGAAGACGAACTGGCCGAAAGAGCAATGCTTCTGTAGAGAATGGAGGGCTGGTGGAATACTTATTTGGTAAAGATGGAAGGGGACGCCTAAAGCATGATAAATTCGTTCAGTTTATAAGAGACTTGCATGATGAAATTGTGAGGTTGGAGTTTGCTCATTATAATTATAAATCTCGAAAAACTATATCGGCCAAGGACTTTGCACGCTCCATTGTTTCTTCTGCTGACTTGAGTCATCTAGGCAGGTTGCTTGAACTGGTTGATGAGTTGAGCAAAGACCCACGGCTTAAGGATGTACGCATAACATTTGAGGAGTTCAAAAACTTTTCCGAGCTGCGGAAAAAGTTATTACCATTTTCGTTGGCCATTTTCAGTTTTTCAGACGTACAAGGCCTGATAACAAGAGATGATTTTCAGCGGGCTGCATCACATGTTTGCGGTTTGTCTCTCTCGGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGACGCAAATAGGGATGGAAGTTTGAGTACAGAGGAGTTTGTTAGAGTGCTGCAACATCGAGAAAGAGACATCGCTCAAACCATGGAGACAGGAATCGTGGGTTTTTTGTCATGCTGCTGGAAATGTACGGACACCTCTCCATCTTCACGGTTGTTTTCCTGGTTTTGA 1404 0.4416 MHSFSTLRRFSPFTQRFRTLSSSSSQSSSSPSPRRNPSWASGSAIIAGVASALALFYCYNSPTSPFHSVFLNNIPRGSSLPFFGRSPVPETANGLLVRDAYRAKVFFYYEKRLRLHSSPEKVFEYFASCRTPEGEILMKPSDLMRAVVPVFPPSESNLVREGYLKGERDPGHLWCPPSDFFMLFDVDNDGLISFKEYMFFVTLLSLPESSFSAVFKMFDRDNDGEIDKEEFKKVMQSMRSHTRLGVHHGDGRRTGRKSNASVENGGLVEYLFGKDGRGRLKHDKFVQFIRDLHDEIVRLEFAHYNYKSRKTISAKDFARSIVSSADLSHLGRLLELVDELSKDPRLKDVRITFEEFKNFSELRKKLLPFSLAIFSFSDVQGLITRDDFQRAASHVCGLSLSDNVVEIVFHLFDANRDGSLSTEEFVRVLQHRERDIAQTMETGIVGFLSCCWKCTDTSPSSRLFSWF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01998 467 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Vian4g01998 467 Gene3D - 160 243 - -
Vian4g01998 467 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 26 456 IPR039800 GO:0005509|GO:0006851
Vian4g01998 467 Pfam EF hand 212 238 IPR002048 GO:0005509
Vian4g01998 467 Pfam EF-hand domain pair 381 432 IPR002048 GO:0005509
Vian4g01998 467 Pfam EF-hand domain pair 181 202 IPR002048 GO:0005509
Vian4g01998 467 SUPERFAMILY EF-hand 271 361 IPR011992 -
Vian4g01998 467 SUPERFAMILY EF-hand 179 429 IPR011992 -
Vian4g01998 467 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Vian4g01998 467 MobiDBLite consensus disorder prediction 18 37 - -
Vian4g01998 467 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Vian4g01998 467 Gene3D - 297 451 - -
Vian4g01998 467 SMART efh_1 176 204 IPR002048 GO:0005509
Vian4g01998 467 SMART efh_1 404 432 IPR002048 GO:0005509
Vian4g01998 467 SMART efh_1 210 238 IPR002048 GO:0005509
Vian4g01998 467 CDD EFh_MICU 211 432 - -
Vian4g01998 467 CDD EFh 181 236 IPR002048 GO:0005509
Vian4g01998 467 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01998 Vian-Chr4 36624920 36629789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01998 82 397 EF-hand Containing Proteins AT4G32060 66.456 9.45e-149 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01998 K22827 - gmx:100786375 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01998 4 36624920 36629789 Vian4g01998 4 36624920 36629789 ECH
Vian7g00451 7 11499782 11501893 Vian4g01998 4 36624920 36629789 PCT