Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01985 ATGGCTTCCCACAAACTCCTCACCATTTTCCTGCTTTCTCTCATTTCTTTCTCTTCATTCGCTCAGGACTGCGCACCTCCAAAGCCCGCACCCAAACCACCCACTCCAAAGCCCGCACCCACACCACCCACTCCAAAGCCCAGCCCAAAGGTAAGCCCACCACCCGCACCCACACCACCCACTCCAAAGCCCAGCCCAAAGGTAAGTCCACCACCCTCGCCCAACGCCTGTCCTCCTACTCCTCCCACTCCTACTCCTCCTCCACCTGCTTCCTGCCCTAAAGACACCCTAAAGCTAGGTGTTTGTGGTAAGGTCTTAGGACTTGTGAACATTATTGTTGGAAATCCTCCTACGAGTGACTGTTGCGCTTTGATCAAAGACTTGGCGGATTTGGAAGCTGCACTTTGCCTTTGCACTGCCATTAAGGCCAATGTGCTTGGAGTCAACTTGAATGTTCCTGTCACGCTCAGCGTCATCCTCAGTGCGTGTCAGAAAACTGTTCCTCCTGGCTTCCAATGTTCCTAG 525 0.5333 MASHKLLTIFLLSLISFSSFAQDCAPPKPAPKPPTPKPAPTPPTPKPSPKVSPPPAPTPPTPKPSPKVSPPPSPNACPPTPPTPTPPPPASCPKDTLKLGVCGKVLGLVNIIVGNPPTSDCCALIKDLADLEAALCLCTAIKANVLGVNLNVPVTLSVILSACQKTVPPGFQCS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01985 174 PRINTS Proline rich extensin signature 35 51 - -
Vian4g01985 174 PRINTS Proline rich extensin signature 21 33 - -
Vian4g01985 174 PRINTS Proline rich extensin signature 70 91 - -
Vian4g01985 174 PRINTS Proline rich extensin signature 57 69 - -
Vian4g01985 174 PANTHER - 8 173 - -
Vian4g01985 174 Gene3D - 90 174 IPR036312 -
Vian4g01985 174 MobiDBLite consensus disorder prediction 26 91 - -
Vian4g01985 174 MobiDBLite consensus disorder prediction 23 91 - -
Vian4g01985 174 SMART aai_6 92 173 IPR016140 -
Vian4g01985 174 CDD HPS_like 90 173 IPR027923 -
Vian4g01985 174 FunFam pEARLI1-like lipid transfer protein 1 90 174 - -
Vian4g01985 174 Pfam Hydrophobic seed protein 92 174 IPR027923 -
Vian4g01985 174 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 95 173 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01985 Vian-Chr4 36481461 36481985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01985 80 173 Acyl Lipid Metabolism Gene Families AT4G22490 37.500 1.13e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01985 - - gsj:114414965 150.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01985 4 36481461 36481985 Vian4g01985 4 36481461 36481985 ECH
Vian7g00436 7 11299681 11300061 Vian4g01985 4 36481461 36481985 PCT