Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01669 ATGCAGCAGAAGCGTCGGACGGTTCCACTGGGCATGCTCAGAAGGTTTCTCGCCGCCTCAATATTCTCCATAGTTCTCACTTCTTTCTTCTTTGTTCACGTTCACGTTTCTCCTTCGCCCACTCATCACAACTTCAGTGACAAGATCCCCTCGTTTTATGACCCGCAAAGCTGGACTCGAGAACTCGTTCCGCCCTATCTATTCAAGACTCCGCTCTCTGTTCCCAAGTTGAAGGGTTCAAGAAAGGAGTCAGACTACGAGAAATTGTGGAAGCCTCCACCAAATCACGGGTTTATACCCTGCACGAAGCCTACTCCTAATTACACAACTCCGACAAGGTCACGGGGTTACCTTTCAGTTCATACAAATGGAGGGCTAAACCAAATGCGTTCTGGGATATGTGATATGGTAGCCATAGCTCGTATCATAAATGCTACTCTTGTGATTCCAGAACTTGATAAAAAATCATTTTGGCATGATACTAGCAATTTCTCTGATATCTTCGATGATGAGTGGTTTATTAGTTCTCTAGCTAATGATATAAAGATCATTAAGAAGTTTCCGAAGGAACTGGTTAAAGCAACCAAAATCGTCATGCAATTCAAAAGTTGGTCTGGTATGGATTACTATGAGAATGAGATTGCTGCCTTGTGGGATAGTTTCAATATAATTCGAGCTTCAAAATCTGATTCTCGGTTAGCAAATAACAATCTACCTCCAGATATTCAGAAGCTTCGCTGCCGTGCTTGTTATGAAGCTCTTCGTTTCTCTCCTCGTATTGAAAAAATGGGAAAAACATTAGTGGAGAGGATGAGGTCATTCGGTCCCTATATTGCATTGCATTTACGTTATGAGAAGGACATGCTTGCATTTAGTGGGTGCACACATGAATTATCTAAAGTTGAATCTCAAGAGCTACGGTTTATCAGAGAGAATACTACTTATTGGAAAAGAAAATACATTAATCCCATAGAAGAGAGGTCCAAAGGGTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTCACTGCTCTTGGATACCCATCAAAGACTCCAATTTATATTGCCGCTGGGGAGATATATGGGGGTGAGTTCCATATGGCTGACCTGCGATCCCGCTATCCACTGTTAATGAGCAAGGAAAAGTTGGTATCCATGGAGGAGCTTGAACCCTTTTCTAGTCATGGGTCTCAAATGGCTGCTCTGGACTATATTGTATCAGTTGAAAGTGATGTGTTTGTACATTCTTACCCTGGAAACATGGCGAAGGCCGTTGAAGGGCATCGTCGATTTCTCGGGAGAGGAAGAACAATATCTCCTGACAGGAAAGCGCTTGTTCGTTTATTTGATAAACTGAAAAATGGATCAATGACCGAGGGGAAAACACTGTCTAATAAAATTATGGATCTTCACAGAAGACGGCTTGGCTTCTTCAGAAAGAGAAAAGGACCCGTTTCTGGAACAAAGGGCTCGGACAGGTTTCGTTCAGAAGAAACATTTTATGCAAACCCTTTACCAGGTTGTTTATGTCGGACAGAATCACTCTCTGTAAACGCTTCTCGGTATAGGTAG 1575 0.4248 MQQKRRTVPLGMLRRFLAASIFSIVLTSFFFVHVHVSPSPTHHNFSDKIPSFYDPQSWTRELVPPYLFKTPLSVPKLKGSRKESDYEKLWKPPPNHGFIPCTKPTPNYTTPTRSRGYLSVHTNGGLNQMRSGICDMVAIARIINATLVIPELDKKSFWHDTSNFSDIFDDEWFISSLANDIKIIKKFPKELVKATKIVMQFKSWSGMDYYENEIAALWDSFNIIRASKSDSRLANNNLPPDIQKLRCRACYEALRFSPRIEKMGKTLVERMRSFGPYIALHLRYEKDMLAFSGCTHELSKVESQELRFIRENTTYWKRKYINPIEERSKGFCPLTPKEVGIFLTALGYPSKTPIYIAAGEIYGGEFHMADLRSRYPLLMSKEKLVSMEELEPFSSHGSQMAALDYIVSVESDVFVHSYPGNMAKAVEGHRRFLGRGRTISPDRKALVRLFDKLKNGSMTEGKTLSNKIMDLHRRRLGFFRKRKGPVSGTKGSDRFRSEETFYANPLPGCLCRTESLSVNASRYR 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01669 524 PIRSF UCP009360 1 513 IPR024709 -
Vian4g01669 524 PANTHER OS02G0726500 PROTEIN-RELATED 14 512 - -
Vian4g01669 524 Pfam GDP-fucose protein O-fucosyltransferase 117 432 IPR019378 -
Vian4g01669 524 FunFam O-fucosyltransferase 28 248 442 - -
Vian4g01669 524 CDD O-FucT_plant 117 438 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01669 Vian-Chr4 32661771 32665349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01669 17 514 Miscellaneous Gene Families AT1G22460 57.643 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01669 - - gmx:100807411 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01669 4 32661771 32665349 Vian4g01669 4 32661771 32665349 ECH
Vian7g00036 7 1715526 1736040 Vian4g01669 4 32661771 32665349 PCT