Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01088 ATGATGAGTTGGTGCAGCGAAGATTTATACAAACGTAGATTGCCAAGAAGCAAAGCAAAAGATGCAGACAAGCCTTTCCATTTATCAGTCCAAGATAGAAGCTCAAGATGCAAGTTGTCTTTCTTAAAACTCATACTATTGATAACCATAAGTGGCACTTTTGTAACACTTCTGTATTCTCCAGAGGTTTACAATACCAACCATTTATCAACCTCAGGATCTCGGTGGATATGGGGTGGCTCAGATCCTCGGTACATATCCAATGTACACACTGACTGGGATGACATACTGAAAATTACGGATAAGCTGACAGGTCAAGATGAACTTCAAGGAATTGGGCTTGTCAATTTCAACAAGACCGAACAAGTCCATTGGGAACATCTTATTCCTGATGCAACACATGCTGTTCTGCCTCTGGAGTATGCTGCAAGAAATGTGACATGGGAATCCTTGTACCCGGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCTGTTTGTCCTTCTCTGCCTACTATTAGACCTCCAGGCATAAGACTTAACCTGATCGCCGTGAAGCTTCCTTGCAGGAATGGAGGAAACTGGTCCAGAGATGTTGCTCGTCTGCATCTTCAGCTTGCAGCTGCTGGGCTTGCAACCTCTTTCAAAGGGAACTACCCCGTTTATGTGCTCTTCATCACCAACTGTTTTCCAATACCAAATCTGTTTTCATGTAAAGAACTAGTTGGGCGTGAAGGGAATGTGTGGTTATACAAACCAAACTTGAGTGTGTTGAGAGAAAAAGTTCAGCTTCCAATAGGGTCTTGTGAACTTGCACTTCCAATGAGAGGCAAAGAGTTGGCTTACAATGGGAATGCTCCTAGAGAAGCCTATGCAACAATTCTACACTCAGCTCATGTGTACGTTTGTGGGGCTATAGCTGCTGCACAAAGCATCCGCATGTCTGGATCAACTCGAGACTTTGTAATACTTGTTGATGAGACGATCAGTGGCTATCACAGAAGTGGTTTGGAAGCAGCAGGATGGAAAGTTAGAACAATACAAAGGATCAGGAACCCCAAAGCTGAAAAAGATGCTTACAACGAATGGAACTACAGCAAGTTCAGGCTGTGGCAGTTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTGAGAAATATAGATTTCCTATTTGGAATGCCAGAAATCACCGCCACTGGAAACAATGCCACTCTCTTCAACTCCGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCACATAAACGAGATTGAGTCCTACAATGGAGGGGACCAAGGATATTTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGTGATGAGGAAGAGAAGAAACAAATGAAGACTTTGTTGTTTGGCGCGGAGCCTCCAATTTTGTATGTCCTGCATTATCTAGGTGTGAAGCCATGGTTATGCTTCCGGGACTATGATTGCAACTGGAATGCTGATATCTTTCATGAATTTGCAAGTGATGTTGCGCATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGTCTGCTGAAATCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGACAGGCAGAAATAGCAAACTACACGGACGGTCATTGGAGAATAAAAGTTAAAGATAGACGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCATTGGGGAGAGACAAATTGGACAGATGACGAGTTTTATACTCCAACACCACCTACCATTACCACAGCATCTCTTTCGGCTTTATGA 1866 0.4293 MMSWCSEDLYKRRLPRSKAKDADKPFHLSVQDRSSRCKLSFLKLILLITISGTFVTLLYSPEVYNTNHLSTSGSRWIWGGSDPRYISNVHTDWDDILKITDKLTGQDELQGIGLVNFNKTEQVHWEHLIPDATHAVLPLEYAARNVTWESLYPEWIDEEEETEVPVCPSLPTIRPPGIRLNLIAVKLPCRNGGNWSRDVARLHLQLAAAGLATSFKGNYPVYVLFITNCFPIPNLFSCKELVGREGNVWLYKPNLSVLREKVQLPIGSCELALPMRGKELAYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDFVILVDETISGYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTLLFGAEPPILYVLHYLGVKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDEFYTPTPPTITTASLSAL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01088 621 PANTHER GLYCOGENIN SUBFAMILY MEMBER 195 581 - -
Vian4g01088 621 FunFam Hexosyltransferase 286 538 - -
Vian4g01088 621 SUPERFAMILY Nucleotide-diphospho-sugar transferases 288 534 IPR029044 -
Vian4g01088 621 CDD GT8_Glycogenin 289 534 - -
Vian4g01088 621 Pfam Glycosyl transferase family 8 295 501 IPR002495 GO:0016757
Vian4g01088 621 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 287 536 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01088 Vian-Chr4 17536866 17539503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01088 2 621 Glycosyltransferase AT3G18660 66.248 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01088 K20890 - gmx:100780439 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01088 4 17536866 17539503 Vian4g01088 4 17536866 17539503 ECH
Vian4g01088 4 17536866 17539503 Vian1g03651 1 59269699 59272561 ECH
Vian1g03651 1 59269699 59272561 Vian4g01088 4 17536866 17539503 PCT