Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03651 ATGGCTACTTCCCCACGTGCTCTTGAAGGTAGACACCGTTTTCCAGCATCCATCAACCATTTACCAAGCGTTCGCTCAGGGTATGCATGTGCTACGTTTAAGTGGATATGGGGTGGATCAGATCCTCGGTATACATCGGATGTAGACATTAACTGGGATGATATGTTACAAATTACAGAGAAACTGACGGGGAAAAATGAATTTCAAGGAGTTGGGCTTTTAAACTTCAATAAGACTGAATTAGACCATTGGGAACAGCTTATTCCTAATGTTACACATGTTGTTCTGGACTTAGAGTATGCTGCAGAAAATGTGACATGGGAATCCCTATACCCAGAATGGATTGAGGAGGAAGAAGGGACCCAAGTTCCGATTTGTCCTTCCCTTCCAAGTGTTAGATCTCCTGGCATAAGGCTCAATCTCATAGCTCTCAAGCTTCCTCATGCCAATGGAGGGAATTGGTCTAGAGATGTTGCTCGGTTGCACTTGCAACTAGCAGCAGCTAGGCTTGCAACCTCTTTCAAAAGCAATTATCCCGTTTATGTGCTTTTTATTACCAAATTCTTCCCAATACCCAATTTGTTTACCTGCAAAGAACTCGTGAGACATGAAGGGAATCTATGGTTGTACAGACCAAACTTGACTGTTTTGAGACAAAAACTCCTCCTCCCAGTAGGATCATGTGAACTTTCACTTCCTTTGAGGGGCAAAGAGCTGATATACGCGGGAAGTGCTCGAACAGAAGCGTACGTAACCATTCTCCATTCAGCTCACGTTTATGTATGTGGAGCTATTGCTGCTGCACAAAGCATTCGGATGTCTGGATCAACTCGAGACCTGGTTATACTTGTTGATGAGACATTGGGTGAGTACCACAGAAGTGGTTTAGAAGCAGCAGGGTGGAAAATTAGGACAATACAAAGGATCAGAAACCCAAAGGCTGAAAAAGATGCTTACAACGAATGGAACTACAGCAAGTTCCGTTTGTGGCAGCTTACAGATTACGACAAGATAATATTCATCGATGCAGATTTGATCATTCTAAGAAATATAGATTTCCTATTTGGAATGCTAGAAATCACTGCAACAGGAAATGATGCCACAGTTTTTAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCAAGCTCCTCATGGATCATATTGATGAGTTTGAGTCCTACAACGGAGGGGACCAGGGATACTTAAATGAAATATTTACATGGTGGCACAGGATACCAAGACGCATGAACTTTTTGAAGCATTTTTGGGTTGGAGATGAGGAAGAGAAGAAGAAAATGAAGACTTTGTTATTTGGTGCTGAGCCTCCAGTTTTGTATGTCCTTCACTATCTAGGAATGAAGCCGTGGTTGTGCTTTCGGGACTACGATTGTAACTGGAATGATGATATCTTTCATGAGTTTGCAAGTGATGTTGCTCATGAAAGGTGGTGGAAGGTGCATGATGCAATGCCTAAGCTTTTGCAACAGTTTTGCATGCTGAAGTCAAAGCAGAAGGCCAAGTTGGAATGGGATCGTAGGCAAGCTGAAATTTCGAACTACTCAGATGGGCATTGGCGAATCGAAGTTAAAGATAAGAGGTTGAAGAAATGCATAGATAAGTTGTGTTCATGGAAAAACATGTTGAAGCATTGGGGTGAAACCAATTGGACTGATGATGAGTCTTATTATACTCCAACGCCGCCTGCCATTGCCACAATCCCTTTCTCATCTGTCACATTAATTTAA 1755 0.4234 MATSPRALEGRHRFPASINHLPSVRSGYACATFKWIWGGSDPRYTSDVDINWDDMLQITEKLTGKNEFQGVGLLNFNKTELDHWEQLIPNVTHVVLDLEYAAENVTWESLYPEWIEEEEGTQVPICPSLPSVRSPGIRLNLIALKLPHANGGNWSRDVARLHLQLAAARLATSFKSNYPVYVLFITKFFPIPNLFTCKELVRHEGNLWLYRPNLTVLRQKLLLPVGSCELSLPLRGKELIYAGSARTEAYVTILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETLGEYHRSGLEAAGWKIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLIILRNIDFLFGMLEITATGNDATVFNSGVMVVEPSNCTFKLLMDHIDEFESYNGGDQGYLNEIFTWWHRIPRRMNFLKHFWVGDEEEKKKMKTLLFGAEPPVLYVLHYLGMKPWLCFRDYDCNWNDDIFHEFASDVAHERWWKVHDAMPKLLQQFCMLKSKQKAKLEWDRRQAEISNYSDGHWRIEVKDKRLKKCIDKLCSWKNMLKHWGETNWTDDESYYTPTPPAIATIPFSSVTLI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03651 584 SUPERFAMILY Nucleotide-diphospho-sugar transferases 248 493 IPR029044 -
Vian1g03651 584 CDD GT8_Glycogenin 248 493 - -
Vian1g03651 584 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 245 496 IPR029044 -
Vian1g03651 584 PANTHER GLYCOGENIN SUBFAMILY MEMBER 154 540 - -
Vian1g03651 584 FunFam Hexosyltransferase 245 497 - -
Vian1g03651 584 Pfam Glycosyl transferase family 8 253 460 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03651 Vian-Chr1 59269699 59272561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03651 40 581 Glycosyltransferase AT3G18660 68.248 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03651 K20890 - gmx:100783884 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03651 1 59269699 59272561 Vian1g03651 1 59269699 59272561 ECH
Vian4g01088 4 17536866 17539503 Vian1g03651 1 59269699 59272561 ECH
Vian1g03651 1 59269699 59272561 Vian4g01088 4 17536866 17539503 PCT