Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01066 ATGGATTCAAGTTCATCCCCGGAATTCGAATATTTGTTTAAGTTGTTGATGATTGGGGACTCGGGTGTTGGCAAGAGTAGTCTCCTCCTCAGTTTCACCTCTGATTCCTTTGAAGATCTTTCTCCTACAATTGGCCATAGGATTGCTAGGGTTGATTTTAAGGTCAAGTATTTGAACATCGAAGGAAAAAGGCTGAAGCTTGCCATTTGGGACACAGCTGGTCAAGAGAGATTCAGAACATTAACGAGTTCTTATTACCGAGGGGCACAAGGGATCATTATGGTATATGATGTAACTCGGCGGGAATCGTTTACGAATCTTGCTGAAATATGGTCAAAGGAAATAGAACTTTATTCAACAAATTTGGAATGCATCAAGATGCTTGTTGGAAACAAAGTGGATAAGGAGGGTGATAGAGTTGTAACCAAGAAAGAGGCAGTAGACTTTGCCCGGGAGTGTGGTTGCCTATTTATCGAATGCAGTGCTAAAACTCGAGTTAACGTACAACAATGCTTTGAAGAACTTGTTCTAAAGATTCTGGATACGCCTAGCCTCTTAGCAGAGGGTGTTAAGAGTAAAAGGAACATATTTAAGGACAAGCCAGCCAACAATGCCACAACTAGTTGTTGCTGA 633 0.4139 MDSSSSPEFEYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGHRIARVDFKVKYLNIEGKRLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRESFTNLAEIWSKEIELYSTNLECIKMLVGNKVDKEGDRVVTKKEAVDFARECGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGVKSKRNIFKDKPANNATTSCC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01066 210 CDD Rab18 13 179 - -
Vian4g01066 210 Pfam Ras family 14 180 IPR001806 GO:0003924|GO:0005525
Vian4g01066 210 SMART ras_sub_4 10 182 - -
Vian4g01066 210 PANTHER RAS-RELATED PROTEIN RAB 12 191 - -
Vian4g01066 210 PRINTS Transforming protein P21 ras signature 157 179 - -
Vian4g01066 210 PRINTS Transforming protein P21 ras signature 122 135 - -
Vian4g01066 210 PRINTS Transforming protein P21 ras signature 58 80 - -
Vian4g01066 210 PRINTS Transforming protein P21 ras signature 13 34 - -
Vian4g01066 210 ProSiteProfiles small GTPase Ras family profile. 4 210 IPR001806 GO:0003924|GO:0005525
Vian4g01066 210 ProSiteProfiles small GTPase Arf family profile. 6 180 - -
Vian4g01066 210 SMART rho_sub_3 15 182 IPR001806 GO:0003924|GO:0005525
Vian4g01066 210 SMART ran_sub_2 18 208 - -
Vian4g01066 210 ProSiteProfiles small GTPase Rho family profile. 6 180 - -
Vian4g01066 210 Gene3D - 6 210 IPR027417 -
Vian4g01066 210 SMART rab_sub_5 13 182 - -
Vian4g01066 210 ProSiteProfiles small GTPase Rab1 family profile. 8 210 - -
Vian4g01066 210 FunFam Ras-related protein RABC1 6 210 - -
Vian4g01066 210 NCBIfam small GTP-binding protein domain 11 174 IPR005225 GO:0005525
Vian4g01066 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 191 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01066 Vian-Chr4 17026972 17036018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01066 14 172 EF-hand Containing Proteins AT5G27540 25.455 2.10e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01066 K07910 - gmx:100779729 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03667 1 59475938 59478777 Vian4g01066 4 17026972 17036018 PCT