Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03667 ATGGATTTGAGTTCGGGGCCTCAAGAATTTGATTATTTGTTCAAGTTGTTGATGATCGGAGACTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCACTGAGGCTTTTGAAGATCTTTCACCCACAATTGGTGTTGATTTTAAGGTCAAATATGTGACGATGGGGGGTAAAAAGCTTAAGCTTGCAATTTGGGACACTGCTGGTCAGGAGAGATTCAGAACACTGACAAGTTCTTACTACCGAGGGGCACAAGGAATCATCATGGTTTATGATGTAACCCGGCGAGATACATTTACAAATCTTTCTGATATATGGGCAAAGGAAATAGACCTTTATTCAACAAATCCAGATTGCATCAAGATGCTTGTTGGAAACAAAGTCGACAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTCGCCAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAATGTTCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTCGATACACCTAGCCTTTTAGCTGATGGCTCAAAGGGCGTACGAAAAAACATTTTTAAGGACAGGCCACCCCAATCTGATGCATCTACAAGTAGTTGTTGCTGA 630 0.4143 MDLSSGPQEFDYLFKLLMIGDSGVGKSSLLLSFTTEAFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNPDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLADGSKGVRKNIFKDRPPQSDASTSSCC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03667 209 SMART ras_sub_4 11 178 - -
Vian1g03667 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Vian1g03667 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Vian1g03667 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Vian1g03667 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Vian1g03667 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Vian1g03667 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Vian1g03667 209 SMART arf_sub_2 1 179 - -
Vian1g03667 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Vian1g03667 209 SMART ran_sub_2 19 204 - -
Vian1g03667 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Vian1g03667 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Vian1g03667 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Vian1g03667 209 FunFam Ras-related protein RABC1 7 209 - -
Vian1g03667 209 ProSiteProfiles small GTPase Ras family profile. 9 209 IPR001806 GO:0003924|GO:0005525
Vian1g03667 209 SMART rab_sub_5 14 178 - -
Vian1g03667 209 CDD Rab18 14 175 - -
Vian1g03667 209 NCBIfam small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Vian1g03667 209 Gene3D - 7 209 IPR027417 -
Vian1g03667 209 PANTHER RAS-RELATED PROTEIN RAB 13 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03667 Vian-Chr1 59475938 59478777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03667 15 168 EF-hand Containing Proteins AT5G27540 25.000 3.99e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03667 K07910 - gmx:100787603 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03667 1 59475938 59478777 Vian4g01066 4 17026972 17036018 PCT