Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00975 ATGGGGGAGGAGGAAAAGAAACCAGAGGAACCCAAGGTGGAGGAAAAAAAACCAGACGAACCAGAAAAAAAACAAGAGGAGAAGAAGGAAGAAGCAGCGGAAAAACCAGCGGGAGAGGATAAACCAGCGGGGGAGAAAAAACCAGAAGTGGTGGAGAAGGAACAAGTGACTCCGCCACCGCCACCGCCACCGCCCGAGATTGTGCTCAAAGTGTTCATGCATTGCGAGGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGTGTCGAAGAAGTGCTCACCGACTGCAAATCTCACAACGTGGTTATCAAGGGAGAGAAAGCGGATCCTCTAAAGGTTTTGGAGAGAATACAGAGGAAGAGTCACAGAAAGGTGGAGCTTCTCTCTCCGATCCCGAAACCTCCAGAGGAGAAGAAGGTCCCGGAAGAAGAAAAACCAAAGCCCAAGGTCGAAGAGAAAGTAGAAGAGCCACCGATTGTGACGGTTCTGAAAATTCACATGCATTGCGAGGCTTGCTCACTGGAAATCAAGAAACGCATACAGAGAATGAAGGGAGTGGAATCAGCTGATCCCGATCTGAAGAACTCAATGGTGAGTGTGAAGGGCGTGTACGATCCAGAGAAGCTGGTTGAGTACGTGTACAAGAGAACTGGGAAGCACGCAGTGATCGTGAAGCGGGAGGCAGAAAAGAAAGAGGAGAAGAAAGAGGAGAAGGTGGAAGAGGTTGAGAAAAAGGAGGAGGTTGAGAAAGAGAAGAAGAGTGGTGAAGGAGAAGAAAACAAGGAAAAGAAAGAGGAAGAAGCAAAGGGTGAGACCAAGGCAGAGGAAGCAGACAACGTTGTTCCAGAGGTGAAGATTAATGAATACTTCTATAACCCACCAAGCTCTGGCATGGAGGTGTATGCATATCCTGCACACCCTGTATACCCTGCATACCCTTCGTATTTCCATGCCTACCCTCCCCAGATATTCAGCGATGAGAACCCAAATGCATGCACTGTCATGTAA 1017 0.4897 MGEEEKKPEEPKVEEKKPDEPEKKQEEKKEEAAEKPAGEDKPAGEKKPEVVEKEQVTPPPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEEVLTDCKSHNVVIKGEKADPLKVLERIQRKSHRKVELLSPIPKPPEEKKVPEEEKPKPKVEEKVEEPPIVTVLKIHMHCEACSLEIKKRIQRMKGVESADPDLKNSMVSVKGVYDPEKLVEYVYKRTGKHAVIVKREAEKKEEKKEEKVEEVEKKEEVEKEKKSGEGEENKEKKEEEAKGETKAEEADNVVPEVKINEYFYNPPSSGMEVYAYPAHPVYPAYPSYFHAYPPQIFSDENPNACTVM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00975 338 Gene3D - 161 227 - -
Vian4g00975 338 CDD HMA 165 224 IPR006121 GO:0046872
Vian4g00975 338 SUPERFAMILY HMA, heavy metal-associated domain 163 226 IPR036163 GO:0046872
Vian4g00975 338 ProSiteProfiles Heavy-metal-associated domain profile. 64 128 IPR006121 GO:0046872
Vian4g00975 338 MobiDBLite consensus disorder prediction 1 53 - -
Vian4g00975 338 MobiDBLite consensus disorder prediction 133 155 - -
Vian4g00975 338 SUPERFAMILY HMA, heavy metal-associated domain 68 123 IPR036163 GO:0046872
Vian4g00975 338 CDD HMA 73 129 IPR006121 GO:0046872
Vian4g00975 338 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 24 338 IPR044577 GO:0046872
Vian4g00975 338 MobiDBLite consensus disorder prediction 230 282 - -
Vian4g00975 338 Gene3D - 64 136 - -
Vian4g00975 338 ProSiteProfiles Heavy-metal-associated domain profile. 161 225 IPR006121 GO:0046872
Vian4g00975 338 Pfam Heavy-metal-associated domain 167 222 IPR006121 GO:0046872
Vian4g00975 338 Pfam Heavy-metal-associated domain 69 123 IPR006121 GO:0046872
Vian4g00975 338 Coils Coil 224 268 - -
Vian4g00975 338 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00975 Vian-Chr4 14501438 14503179 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00975 - - vum:124845859 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00975 4 14501438 14503179 Vian4g00975 4 14501438 14503179 ECH
Vian1g03790 1 60922368 60923891 Vian4g00975 4 14501438 14503179 PCT