Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g03796 | ATGTCAATTCAAAGTGTTTCTTCTCGAAGGGGGGGTTCGTTGACGAACAGCCCCTCGCAGAACAAGAAGAAAGCCTCTGAGTATTCGTCGCTTGACCTTACTCCTCGTAAAACGTTCCCGTCACCGCGCACCGTGGGAGAGCGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAAACAACCACCGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTACTACTAACAGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATGTAACAACAAGAGTCATTGCTCGTGAGGTTAATCTCGAAGAAACAACCGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAACGGAGAAGTTGTTGCCATACTTGACATAGCGAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCAGAGAAAGGAAGGGCAATTGCGGCTGCTGTTGAAGGCACCAATTCGACGTTCTTTGAGACACTTCGCGAGCAGATATTCAAGCCTTCTTTGTCTACTATCATTCCTGAGAATTCAAAGGTTGTTACAGTTTCACCAACAGACTCAGTTTTGGCGGCAACAAAGAAAATGCTTGAACTTCGTGCAAGTTGTGCAGTTGTGACTGTTAATGACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTGATAGCACAAAGTCTTCCTCCAGCCTTAACTCTTGTTGAGAAGGTCATGACTCCAAGTCCAGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCCGTTATTGATAGAGATGGTACTGTTGTTGCTACGGTTGATGTAATTCATATAACTCACGCCGCTGTAGCGACAGCTAGTCAGGTCGGAAACAGTGCTGGTTTTAATAATGAAGCAGCCAACACCATGATACAAAAATTTTGGGATTCGGCCATGGCCTTAGTTCCAAATGGGGACGACGACGATTCCCAAAGCGAAACTTCCTTGAAAATGATTTCTGAGGGAGGAGAATTAGGGAGAAACCTTTCGTATCTTGGGTCAAGCATGCCGAATGCATTTTCCTTCAAATTACAAGACAGGAAGGGTAGATTGCATAGATTCACATGCGATACTCGGAGCTTGACAGAGGTAATAACTTGCATCATTCATAGAGTCGGTGATGAAATTGACCCCACGAACCTGCCCCAAATTTTGTACGAAGATGAAGAAAATGATAAAGTTGTACTGGCTTCGGACAGTGATCTTGCCGCAGCTGTAGACCACGCAAAGGCGGCTGGTTTGAAGGGATTGAGATTGCATTTAGACTACTCAGGAACACGGGGTTATGGAAATGATTCAAGTTCAGTGAGTTTGAAATATGGTAATTCAGAATCATGGGCAACAGCATACAGCACCTTTGCTGCTGGAGCTGCAATTGTTGCTGCCTTAGGCCTAATGGCGTTTGTGAGGCGAAGTCAATAA | 1599 | 0.449 | MSIQSVSSRRGGSLTNSPSQNKKKASEYSSLDLTPRKTFPSPRTVGERTVKSLRLSKALTVPETTTVYEACRRMAARKVDALLLTDSNALLCGILTDKDVTTRVIAREVNLEETTVSKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGRAIAAAVEGTNSTFFETLREQIFKPSLSTIIPENSKVVTVSPTDSVLAATKKMLELRASCAVVTVNDKPCGILTSKDILMRVIAQSLPPALTLVEKVMTPSPECAIIDTPIVDALHTMHDGKFLHLPVIDRDGTVVATVDVIHITHAAVATASQVGNSAGFNNEAANTMIQKFWDSAMALVPNGDDDDSQSETSLKMISEGGELGRNLSYLGSSMPNAFSFKLQDRKGRLHRFTCDTRSLTEVITCIIHRVGDEIDPTNLPQILYEDEENDKVVLASDSDLAAAVDHAKAAGLKGLRLHLDYSGTRGYGNDSSSVSLKYGNSESWATAYSTFAAGAAIVAALGLMAFVRRSQ | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g03796 | 532 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Vian1g03796 | 532 | Gene3D | - | 40 | 185 | IPR046342 | - | |
| Vian1g03796 | 532 | SUPERFAMILY | CAD & PB1 domains | 392 | 485 | - | - | |
| Vian1g03796 | 532 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 35 | 468 | - | - | |
| Vian1g03796 | 532 | Gene3D | - | 204 | 340 | IPR046342 | - | |
| Vian1g03796 | 532 | ProSiteProfiles | CBS domain profile. | 278 | 335 | IPR000644 | - | |
| Vian1g03796 | 532 | SUPERFAMILY | CBS-domain pair | 215 | 328 | IPR046342 | - | |
| Vian1g03796 | 532 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Vian1g03796 | 532 | SMART | PB1_new | 398 | 483 | IPR000270 | GO:0005515 | |
| Vian1g03796 | 532 | ProSiteProfiles | PB1 domain profile. | 396 | 483 | IPR000270 | GO:0005515 | |
| Vian1g03796 | 532 | SMART | cbs_1 | 216 | 263 | IPR000644 | - | |
| Vian1g03796 | 532 | SMART | cbs_1 | 57 | 105 | IPR000644 | - | |
| Vian1g03796 | 532 | SMART | cbs_1 | 281 | 329 | IPR000644 | - | |
| Vian1g03796 | 532 | SMART | cbs_1 | 123 | 167 | IPR000644 | - | |
| Vian1g03796 | 532 | Pfam | PB1 domain | 399 | 481 | IPR000270 | GO:0005515 | |
| Vian1g03796 | 532 | ProSiteProfiles | CBS domain profile. | 120 | 178 | IPR000644 | - | |
| Vian1g03796 | 532 | ProSiteProfiles | CBS domain profile. | 210 | 269 | IPR000644 | - | |
| Vian1g03796 | 532 | SUPERFAMILY | CBS-domain pair | 47 | 163 | IPR046342 | - | |
| Vian1g03796 | 532 | CDD | CBS_pair_MUG70_1 | 55 | 171 | - | - | |
| Vian1g03796 | 532 | CDD | CBS_pair_MUG70_2 | 214 | 330 | - | - | |
| Vian1g03796 | 532 | ProSiteProfiles | CBS domain profile. | 54 | 113 | IPR000644 | - | |
| Vian1g03796 | 532 | Pfam | CBS domain | 214 | 260 | IPR000644 | - | |
| Vian1g03796 | 532 | Pfam | CBS domain | 274 | 325 | IPR000644 | - | |
| Vian1g03796 | 532 | Pfam | CBS domain | 56 | 101 | IPR000644 | - | |
| Vian1g03796 | 532 | Pfam | CBS domain | 116 | 160 | IPR000644 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g03796 | Vian-Chr1 | 61010074 | 61016315 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g03796 | - | - | gmx:100783514 | 848.966 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian1g03796 | 1 | 61010074 | 61016315 | Vian1g03796 | 1 | 61010074 | 61016315 | ECH | |
| Vian4g00968 | 4 | 14274320 | 14284647 | Vian1g03796 | 1 | 61010074 | 61016315 | PCT |