Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00920 ATGAGCGTGCACTTCCACTACTACCCTTTCTCACCGTTGGCTTATGGTTGCAACTATTATGCTGCTTATGCAACAAAACGCACTCTCTCCAACCACCGTTGTATTCCACCGCACTCTTCCAGCTTCTCCGCCATCACCAATCTTTTGTTCCAAAACCCTAATTTCTTCACGGGGAACACACTCTTCCTTAGGATGAAGCGATTTTACCCTGTGAGTGGCACGAGTAAGATCAAAGCGATGGTGGAGAGGTTGCAGCGATGTGGAGTGATCACATCAAGTAAAGTGGCTGAAGTAATGGAGAAAGTTGACAGAGCGTTGTTTGTACCTGATGGAGCTGAGCCTTATGATGACAGTCCCATGGCCATAGGATACAATGCCACTATATCTGCCCCGCATATGCATGCCATGTGTCTTCAGTTGCTTGAGGATAAGTTGCAGCCTGGGATGCGTGCTTTGGACGTTGGCTCTGGAACGGGGTATCTGACGGCGTGCTTTGCCTTGATGGTTGGACCCCAAGGCCGTGCTGTTGGTGTAGAGCATATTCCTGAATTGGTTTCTTCTTCAATTGAGAATATTCAGAAAAGTGCTGCTGCCACACAATTGACTGATGGATCCCTTTCTATCCATGCTGGTGATGGGAGGGAAGGTTGGCTAGAGTTTGCACCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATTCCCCAACCACTCATTGACCAGCTGAAGGCTGGAGGTAGAATGGTGATTCCTGTTGGAAACATATTTCAAGATTTAAAGGTGGTGGATAAGAATTCTGATGGTTCTATCAGTGTCCGGACTGAGACATCTGTTCGTTACGTTCCCCTCACTAGTCGAGAAGCTCAACTGCGAACTTACTAA 885 0.4757 MSVHFHYYPFSPLAYGCNYYAAYATKRTLSNHRCIPPHSSSFSAITNLLFQNPNFFTGNTLFLRMKRFYPVSGTSKIKAMVERLQRCGVITSSKVAEVMEKVDRALFVPDGAEPYDDSPMAIGYNATISAPHMHAMCLQLLEDKLQPGMRALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELVSSSIENIQKSAAATQLTDGSLSIHAGDGREGWLEFAPYDAIHVGAAAPEIPQPLIDQLKAGGRMVIPVGNIFQDLKVVDKNSDGSISVRTETSVRYVPLTSREAQLRTY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00920 294 Gene3D Vaccinia Virus protein VP39 71 294 IPR029063 -
Vian4g00920 294 NCBIfam protein-L-isoaspartate O-methyltransferase 75 290 IPR000682 GO:0004719|GO:0036211
Vian4g00920 294 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 68 262 IPR029063 -
Vian4g00920 294 CDD AdoMet_MTases 150 253 - -
Vian4g00920 294 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 211 226 IPR000682 GO:0004719|GO:0036211
Vian4g00920 294 FunFam Protein-L-isoaspartate O-methyltransferase 70 294 - -
Vian4g00920 294 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 76 292 IPR000682 GO:0004719|GO:0036211
Vian4g00920 294 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 78 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00920 Vian-Chr4 13097890 13100158 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00920 K00573 - gmx:100810913 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00920 4 13097890 13100158 Vian4g00920 4 13097890 13100158 ECH
Vian1g01259 1 13618298 13620570 Vian4g00920 4 13097890 13100158 PCT