Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00893 ATGGCCACAGCTTCGCAAAAGGCGACGCCACCACTACCGCCGCCGCCGTCCTCTTCTTGCTGTCCCGCCGCCGACTCCGCCGCCATTCCCCGTGCCGCCGCCCCGCCGCAGGAGTGGAACGCCGCCACCGACGTCCCTCTCATTCGTCCCGTCGATTCCTCCACCAATGCCTCTGCTGCCAAGGGAGTCACTGCAATGCCAAGGCCCCAGTCCAGCCACCCTTTGGACCCTTTAACTTCTGCTGAAATATCAGTGGCCGTGGCAACTGTGAGGGCCGCTGGAGCTACTCCTGAGCTTAGAGATAGTATGCGCTTCATTGAAGTAGTTTTACTGGAGCCCGATAAAAATGTTGTTGCACTGGCAGATGCATATTTCTTTCCGCCTTTCCAACCATCATTACTGCCCAGAACTAGAGGAGGACCTTTAATTCCAACTAAACTCCCTCCAAGATGTGCTAGACTTGTTGTTTACAATAAGAAATCTAACTTGACTAGTATATGGATTGTTGAGTTGTCACAAGTACATGCTGTAACTCGAGGTGGTCATCACCGAGGAAAAGTAATTTCATCACATATTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAATATGCAGAATGTGAGGCTGTAGTCAAAAGTTTTCCCCCATTTATTGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGACCTTGTAATGGTCGATCCCTGGTGTGTTGGTTATTATAGTGAAGCAGATGCGCCTGGGAGAAGACTTGCTAAACCCCTCATATTTTGCCAATCTGAGAGTGACTGCCCCATGGAAAATGGCTATGCCCGCCCAGTTGAGGGCATCTATGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGATCGTAAACTTGTTCCCCTTCCACCAGTTGATCCCTTGAGGAATTATACTCCGGGTGAAACCAGAGGTGGCTCTGATAGAAGTGACGTAAAACCGTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTCAATGGGTATTTTGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGTTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCATGGACGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTTCCGTATGGAGATCCCAACGACCCACATTATCGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAGTATTTTGATGCTCACTTCACTAATTTCACCGGTGGGGTGGAAACAATTGAAAACTGTGTATGTTTACATGAAGAGGATCACGGAATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGAAGATCTAGGAGACTTACTGCATCTTTCATGTGTACCGTGGCTAACTATGAGTATGGATTTTTTTGGCACTTTTATCAGGATGGAAGGATTGAAGCTGAAGTCAAGCTTACTGGAATTCTTAGCCTAGGGGCCTTGCTGCCTGGAGAGTTTAGAAAATATGGAACCATGATTGCACCTGGTCTATATGCACCAGTTCATCAACACTTTTTTGTTGCTCGTATGGACATGTCTGTTGATTCTAAACCAGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAATTGAGGAACCAGGTGAGAATAATGTTCATAACAATGCTTTCTATGCTGAAGAGACTTTGCTTAGATCTGAATTGGAAGCCATGCGAGATTGTAATTCTTTGACTGCTCGACATTGGATTGTAAGGAACACTAGAACATGCAATAGAACTGGCCAGTTGACGGGATACAAGCTGGTACCTGGCTCAAACTGCTTACCGTTGGCAGGTTCGGAAGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATTTCTGGGTAACAACATATTCACGTAATGAGATGTTTCCTGGAGGAGAATTTCCAAATCAAAATCCGCGTGTTAGTGAAGGACTAGCTACATGGGTTAAGCAGAACCGATCTTTGGAAGAAACTAATATAGTTCTTTGGTATGTATTTGGAATCACACATGTTCCCCGTTTGGAAGACTGGCCGGTTATGCCAGTAGAGCACATTGGTTTTATGCTCACGCCTCATGGATTCTTCAATTGTTCCCCTGCAGTAGACGTCCCACCTAATACATGTGAAATGGATTCTAAAGATAATGAAATTAAGGATAATGGTTCTTCGAAGCCAATTCCGAGTGGGTTGACGGCAAAGCTTTAG 2310 0.4524 MATASQKATPPLPPPPSSSCCPAADSAAIPRAAAPPQEWNAATDVPLIRPVDSSTNASAAKGVTAMPRPQSSHPLDPLTSAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKNVVALADAYFFPPFQPSLLPRTRGGPLIPTKLPPRCARLVVYNKKSNLTSIWIVELSQVHAVTRGGHHRGKVISSHIVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYYSEADAPGRRLAKPLIFCQSESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGETRGGSDRSDVKPLQIIQPEGPSFRVNGYFVEWQKWNFRIGFTPKEGLVIYSVAYVDGSHGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTASFMCTVANYEYGFFWHFYQDGRIEAEVKLTGILSLGALLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMSVDSKPGEALNQVVEVNMKIEEPGENNVHNNAFYAEETLLRSELEAMRDCNSLTARHWIVRNTRTCNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNFWVTTYSRNEMFPGGEFPNQNPRVSEGLATWVKQNRSLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLTPHGFFNCSPAVDVPPNTCEMDSKDNEIKDNGSSKPIPSGLTAKL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00893 769 Gene3D - 202 305 - -
Vian4g00893 769 FunFam Amine oxidase 203 306 - -
Vian4g00893 769 Pfam Copper amine oxidase, N2 domain 73 157 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 Gene3D - 55 200 - -
Vian4g00893 769 FunFam Amine oxidase 317 742 - -
Vian4g00893 769 Gene3D Copper amine oxidase, catalytic domain 314 740 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 MobiDBLite consensus disorder prediction 1 41 - -
Vian4g00893 769 FunFam Amine oxidase 57 200 - -
Vian4g00893 769 PANTHER COPPER AMINE OXIDASE 68 751 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 SUPERFAMILY Amine oxidase N-terminal region 71 199 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 Pfam Copper amine oxidase, N3 domain 198 301 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 MobiDBLite consensus disorder prediction 746 769 - -
Vian4g00893 769 Pfam Copper amine oxidase, enzyme domain 327 735 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 SUPERFAMILY Amine oxidase N-terminal region 197 315 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vian4g00893 769 MobiDBLite consensus disorder prediction 56 75 - -
Vian4g00893 769 SUPERFAMILY Amine oxidase catalytic domain 321 740 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00893 Vian-Chr4 12628542 12635329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00893 K00276 - gmx:100798722 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00893 4 12628542 12635329 Vian4g00893 4 12628542 12635329 ECH
Vian1g01232 1 13316636 13318450 Vian4g00893 4 12628542 12635329 PCT