Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01232 ATGATGGGCAATCCTAACCCTAATCCTAGCCCTAATCCTGCTCCGGAAAAGGAAAAGAGGCTCCAAGAAGAGCTGTTGGGTCCCATCTTACTGGGAGACCGCGTCATAAAACTGGCTCAGGAGGTGGAGTCGTCCAAGGTGGACTGCACGGAGCTGGCGCGGAAGGTGCAGGTGGTGTGCGACAACCTGCGCTCCGTCGTGCGTGTGGTGTCGGGGACGCAGTGCGTGAACGAGCGCCCCATACGCCGCATCGTCGGCGAGGTCTTCAAAAACCTAGAGCGCACTTTAGCGTTCTTGCGCAAGTGCAAGAAACACGGTGGCGTCCTCCGCCAGGTCTTCTCCATGACCACGACCGCCGACTTCCGCAAGGTCTGGAACCTTCTGGAATCCTCGAACGGTGACTTGGTGTGGCTCCTCACCATCTTGGACTCGAAGGAGGGCACCAATGTCTCCCTCCCCCCCATCGCCAGCAACGACCCCATCCTTGCATGGGTCTGGACCTTCACCTACACTCTTCAATTGGGTCAGCCCAAGGACCGCGCTGAAGCCGCCACTGAACTTGGCTCCCTTGCCAGAGGCAACGAGCGTACAAAATTCATCATCTTGGAGGAAGGTGGAGTTCCCCCTCTCCTCAAGCTTCTCAAGGAAGCTTCTTCCCCTGATGCTCAGGTTGCTGCTGCCAATGCTCTTGTCAACGTTACTACTAATCAAGAGAGAGTCGTTAGCTACGTCGTAGAGTCCCATGCTGCCCCCACTATTGTTCAGGTCCTTGGTGACTCCCCTATGAGTGTTCGTGTCTCTGTTGCCAATTTGGTCTCGGCTATGGCTGAGCAACATGAACTTGCTCGCGAGGAGTTCGTGAGGGCCAATGTGACTAGACCCCTCGTGTCGTTGTTGTCCATGGATACAGTCCTTGCTGACCCCATGGCCGGTCGTGCTAGTATCCATTCGCTCGTTCTGAATTTGTCCAACGTTGGGGAGACAAATTCGGATGGGAGTAGCCGTGGCTCCAGCCACCATCGGAGGGAAAGAGAAAGAGAGGTTGAGAGCCCGGAGTTGAGGAATGAGGTCAAAATCAGTTGTGCTAAGGCTCTCTGGAAACTCTCCAAAGGGTGTCTTTCAAGTTGCAAGAAGATTACCGAGACTAAAGGTTTGCTTTGTCTTGCTAAGATTATTGAGTCTGAGAGTGGGGAATTGCAACTTAATTGTCTTATGGCTGTCATGGAGATTGCTGCTGTGGCAGAGTCCAATGCTGATCTTAGAAGAGTTGCTTTTAAGCGAACTGCGCCTGCGGCAAAGGCGGTACTGGATCAGCTGTTGAGGGTGGTTCAGGAAGAGGGTAATCCGGCACTGGTGATTCCTGCCATTAAGGCAATTGGTTCCTTAGCCAGAAACTTTTCTGGAAAGATTCCGCAAGTTCTTGGTCCTTTAGTTGCTCAGCTTGGTAGCAGAGATGTTGACGTAGCCAGTGAGGCTGCCATTGCATTGGGAAAGTTTGTCAGCCCGGACAACTACAATTGTGTTGACCATTCTAAAGCAATACTTGAGCTTGATGGGGTTCCGAAGCTAATGAGCCTGCTGCAGATAAATGATCGCCAACAAGTTCATGGCCTGAAATTACTTTGTTACCTTGCCTTAAATGTAGGTAACAGTAAGGTCCTTGAGCAAGAACGTGCCTTGAATACCTTAGAGAGGTATGCTCGTCTTGTTCAAACACAATATTCTGATTTGAAGGACCTGCATGCAAAGGCTATACACCACCTCAGTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA 1815 0.5179 MMGNPNPNPSPNPAPEKEKRLQEELLGPILLGDRVIKLAQEVESSKVDCTELARKVQVVCDNLRSVVRVVSGTQCVNERPIRRIVGEVFKNLERTLAFLRKCKKHGGVLRQVFSMTTTADFRKVWNLLESSNGDLVWLLTILDSKEGTNVSLPPIASNDPILAWVWTFTYTLQLGQPKDRAEAATELGSLARGNERTKFIILEEGGVPPLLKLLKEASSPDAQVAAANALVNVTTNQERVVSYVVESHAAPTIVQVLGDSPMSVRVSVANLVSAMAEQHELAREEFVRANVTRPLVSLLSMDTVLADPMAGRASIHSLVLNLSNVGETNSDGSSRGSSHHRREREREVESPELRNEVKISCAKALWKLSKGCLSSCKKITETKGLLCLAKIIESESGELQLNCLMAVMEIAAVAESNADLRRVAFKRTAPAAKAVLDQLLRVVQEEGNPALVIPAIKAIGSLARNFSGKIPQVLGPLVAQLGSRDVDVASEAAIALGKFVSPDNYNCVDHSKAILELDGVPKLMSLLQINDRQQVHGLKLLCYLALNVGNSKVLEQERALNTLERYARLVQTQYSDLKDLHAKAIHHLSLYQPGAQLHRQPLGL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01232 604 SUPERFAMILY ARM repeat 176 579 IPR016024 -
Vian1g01232 604 Gene3D - 25 141 IPR036537 GO:0007166
Vian1g01232 604 MobiDBLite consensus disorder prediction 327 352 - -
Vian1g01232 604 MobiDBLite consensus disorder prediction 334 352 - -
Vian1g01232 604 Gene3D - 348 598 IPR011989 -
Vian1g01232 604 Pfam Armadillo/beta-catenin-like repeat 199 234 IPR000225 GO:0005515
Vian1g01232 604 PANTHER ARMADILLO REPEAT ONLY 4 21 592 - -
Vian1g01232 604 FunFam Armadillo repeat only 2 334 588 - -
Vian1g01232 604 SMART arm_5 279 370 IPR000225 GO:0005515
Vian1g01232 604 SMART arm_5 194 235 IPR000225 GO:0005515
Vian1g01232 604 SMART arm_5 236 277 IPR000225 GO:0005515
Vian1g01232 604 SMART arm_5 507 546 IPR000225 GO:0005515
Vian1g01232 604 Gene3D - 168 335 IPR011989 -
Vian1g01232 604 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 205 238 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01232 Vian-Chr1 13316636 13318450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01232 - - gmx:100813824 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01232 1 13316636 13318450 Vian1g01232 1 13316636 13318450 ECH
Vian1g01232 1 13316636 13318450 Vian4g00893 4 12628542 12635329 PCT