Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00888 ATGCCCAAGCTTACTTTCTTCTCTTCTAGACATTTCTTGGTGTTATCCCTTGCCTTGAACGTCAGTCTCATACTCAGATTAATGCTCCACGAAGGAGAAGAACCCCATAGCCATTCTTGTTTCGGATCACAAACAGGGTCATCGATTGCAAGAACCAATTCCAACATGCTTATATCATCATCCAATTCAAATACTTGCACAACTGGAGCTGGGAATAGAGTGATCAACCTCGACCATGTCAATCGTGGCTCTGTTTCTGGTAGCTATGACTTAGTCTTGCGTCTTTGGTACTGTTCTTTGCGTTCTGCTAGCGCTATTGTTGCCCGAGAAGACAGGGACAACTCATTTTCTCTAACTGGAGACCCGAGAGTGTACGAGAGATTTTGGCGACGAACGGAGTTTGCAAGGGAAGTGGTGAGGTTGCACACAGTGGTGGGGAATGCTGTCACAGAAGGGAGACACATTGTGGTTGGCACAGGTTCTTCCCAGCTTTTTCTGGCTGCTCTCTATGCTCTCTCCCCTACCGATGCACCTGAACCAATCAGTGTTGTCTGTGCCTCACCCTACTACTCATCGTACCCATCAATGACGAATCACCTGAAATCAGGACTGTACCAATGGGGTGGTGATGCAGCAAGTTTTGAGAAAGAGGGTCCCTACATTGAGCTGGTTACTTCTCCCAATAATCCTGATGGACATGCAAGAATATCTAAGGTCAACAGAAGCCAGGGATTTTTGGTTCATGACCTTGCTTATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCATGATCTTACCCTTTTCACTGTTTCAAAAACCACTGGCCATGCTGGAATGCGCATAGGGTGGGCTCTTGTGAAAGACAAAGAAGTGGCAAAGAAAATGACAAAATTCATAGAGCTGAACACAATTGGAGTGTCTAAGGATTCTCAACTCAGGGCTGCTAAGGTTTTAAGGGCAGTTTCTGACAGCTGGGAACAAGGAAACTCCAAAGAGGGGGAGTCATTCTTCAAGTTCAGCCACAAACTCATGGCAAACAGGTGGAAACAACTGAGACTAGTGGTGGAGCATAGTGAGTTGTTCAGTTTGCCTAAATTTTCACAATCATTCTGCACTTTTTTCAAACAGGTCTTGGAGCCTCAACCAGCTTTTGTGTGGTTAAAGTGTGAGGGAAACGTGGAAGACTGCGAAAGCTTCCTTCGAGCACACAACATCTTAACTAGAAGTGGAAAACACTTTGGGGTCAGTCCAAAATACGTAAGAATTAGCATGTTGGATACTGATGAAAATTTTAGCCACTTTCTAGAGAGACTTTCTGCCATAAAGTCGTGA 1341 0.4504 MPKLTFFSSRHFLVLSLALNVSLILRLMLHEGEEPHSHSCFGSQTGSSIARTNSNMLISSSNSNTCTTGAGNRVINLDHVNRGSVSGSYDLVLRLWYCSLRSASAIVAREDRDNSFSLTGDPRVYERFWRRTEFAREVVRLHTVVGNAVTEGRHIVVGTGSSQLFLAALYALSPTDAPEPISVVCASPYYSSYPSMTNHLKSGLYQWGGDAASFEKEGPYIELVTSPNNPDGHARISKVNRSQGFLVHDLAYYWPQYTPISAPADHDLTLFTVSKTTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSWEQGNSKEGESFFKFSHKLMANRWKQLRLVVEHSELFSLPKFSQSFCTFFKQVLEPQPAFVWLKCEGNVEDCESFLRAHNILTRSGKHFGVSPKYVRISMLDTDENFSHFLERLSAIKS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00888 446 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 107 443 - -
Vian4g00888 446 CDD AAT_like 133 441 - -
Vian4g00888 446 Pfam Allinase 129 444 IPR006948 GO:0016846
Vian4g00888 446 Gene3D - 131 329 IPR015421 GO:0003824
Vian4g00888 446 SUPERFAMILY PLP-dependent transferases 130 443 IPR015424 -
Vian4g00888 446 Gene3D Aspartate Aminotransferase, domain 1 330 446 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00888 Vian-Chr4 12413208 12419496 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00888 K16903 - gmx:100807013 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00888 4 12413208 12419496 Vian4g00888 4 12413208 12419496 ECH
Vian1g01226 1 13224612 13230182 Vian4g00888 4 12413208 12419496 PCT