Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01226 ATGGTTGCAGTTCCATCTCTGTTTTCCTTGAGGCACTTGCTGGTGCTGTCTCTTGCCCTGAATGTTAGTCTTATCCTTAGAGCTCTATATCACGAGAGGGGAGAAGACAACAAGTGGTGGTTTTGCTTCAAGAAGAAAATGATGGAAGATGCAGAATCATGTTTCACTACATCTTCAACCGCGTCTCTCCACAATTCTACTCGTGAAAAAGTCATCGACTTGGATCATGGTGACCCAATAATGTATGAAAGATTCTGGCGACAAATGGGTGACAAGACTACAATCACAATTCCAGGATGGCAATCAATGAGTTATTTATCTGATGGCTCAAACATTTGCTGGTTTTTGGAGGCTGAGTTTGCAACGGAAGTGGTGAGGTTGCACAAAGTGGTGGGCAATGCTGTGACAGAAGGTCGCCATGTTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGTGTTGTATCTGCCGTGCCCTATTATTCGTCGTACCCCTCAATGGCAGATTACCAGAAATCAGGCCTTTACCAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAAGGTCCTTACATTGAGCTGGTTACTTCTCCCAATAACCCTGATGGATATAGAAGGAAATCAATGGTGAACAGAAACCAGGGACTATTGATTCATGACCTTGCCTATTATTGGCCACAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACGCTTTTTACTGCCTCAAAAACCACTGGTCATGCTGGAATGCGCATAGGGTGGGCTCTTGTGAAAGATAAAGAGGTAGCGAAGAAAATGACTAAATTCATAGAGCTGAATACAATTGGTGTCTCGAAGGATTCTCAACTGAGAGCTGCCAAGGTTTTAAAGGCTGTCTCTGAGAGCTGTGGAGAAGAAAACCACAAAAACGGGGAATCATTTTTCAAGTACAGCTACAACCTCATGGCACAAAGGTGGAAGCAACTGAGGGAAGTAGTTGATGCCGGTGATATGTTCACAATCCCCCAATTTTCTCCCGCATTCTGCACCTTCTTTGGTAAAGAGACGGAGCCTCAGCCTGCTTTCGTGTGGTTGAAGTGCGAGGGAGATGTTGAGGACTGCGAGACCTTCCTTCGAGGACACAAAATTATAACCAGAAGTGGCACACAGTTTGGGGCTAGCCCAAAATATGTAAGAATTAGCATGTTGGATACAGATGAAACTTTTATACAGTTTATAGAGAGACTATCAGCCATACAGGAGCGAGAATGA 1305 0.446 MVAVPSLFSLRHLLVLSLALNVSLILRALYHERGEDNKWWFCFKKKMMEDAESCFTTSSTASLHNSTREKVIDLDHGDPIMYERFWRQMGDKTTITIPGWQSMSYLSDGSNICWFLEAEFATEVVRLHKVVGNAVTEGRHVVVGTGSSQLILAALYALSSPDAAEPISVVSAVPYYSSYPSMADYQKSGLYQWAGDAENFDKEGPYIELVTSPNNPDGYRRKSMVNRNQGLLIHDLAYYWPQYTPISSPSDHDLTLFTASKTTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLKAVSESCGEENHKNGESFFKYSYNLMAQRWKQLREVVDAGDMFTIPQFSPAFCTFFGKETEPQPAFVWLKCEGDVEDCETFLRGHKIITRSGTQFGASPKYVRISMLDTDETFIQFIERLSAIQERE 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01226 434 CDD AAT_like 119 427 - -
Vian1g01226 434 Gene3D Aspartate Aminotransferase, domain 1 323 431 IPR015422 GO:0003824
Vian1g01226 434 SUPERFAMILY PLP-dependent transferases 62 430 IPR015424 -
Vian1g01226 434 Gene3D - 43 112 IPR037029 GO:0016846
Vian1g01226 434 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 81 429 - -
Vian1g01226 434 Pfam Allinase 72 430 IPR006948 GO:0016846
Vian1g01226 434 Gene3D - 116 320 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01226 Vian-Chr1 13224612 13230182 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01226 K16903 - gmx:100777098 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01226 1 13224612 13230182 Vian1g01226 1 13224612 13230182 ECH
Vian1g01226 1 13224612 13230182 Vian4g00888 4 12413208 12419496 PCT