Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00884 ATGAAGGCAACTCTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAACTCAACCGCTGAACAAGTCACTGAAGATTCTTCTTGCTTCCTTCCTTCATCTCTAACAGCTCTCATCACTGGGGCAAGTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGTAAAGAGAGGAGTGAGAGTTGTAATCGGTGCAAGGGACTTGAAGAAGGCCATGGAAGTGAAAAAGAGCATACAAAAGGAGAGGCCAAAGGCTGAGGTTGTTCTGTTGGAGATTGATCTTAGCTCTTTTGGTTCTGTACAGAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCAGGGATATTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGACCACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAGATTTTATTAGAAAAAATGATAGAGACGGCTGAGAAGACAGGTATTGAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGATGCTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCCAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGCACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCACAAGGGCTTATTAACGGGTAGTTAA 771 0.4008 MKATLRYLAGMAGPSGFGSNSTAEQVTEDSSCFLPSSLTALITGASSGIGAETARVLVKRGVRVVIGARDLKKAMEVKKSIQKERPKAEVVLLEIDLSSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEDKIETTFATNYLGHFLLTEILLEKMIETAEKTGIEGRIINVSSVIHSWVKKDAFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAAHPGIVKTGIIRAHKGLLTGS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00884 256 Pfam short chain dehydrogenase 39 180 IPR002347 -
Vian4g00884 256 Gene3D - 30 255 - -
Vian4g00884 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Vian4g00884 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Vian4g00884 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Vian4g00884 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 249 IPR036291 -
Vian4g00884 256 PANTHER RETINOL DEHYDROGENASE 14 251 - -
Vian4g00884 256 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vian4g00884 256 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Vian4g00884 256 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Vian4g00884 256 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vian4g00884 256 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00884 Vian-Chr4 12298158 12302441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00884 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 29.536 9.69e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00884 - - gmx:100801384 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00884 4 12298158 12302441 Vian4g00884 4 12298158 12302441 ECH
Vian1g01225 1 13201759 13203931 Vian4g00884 4 12298158 12302441 PCT