Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01225 ATGAAGGCAACACTGCGATACTTAGCAGGCATTGCTGGCCCAAGTGGTTTCGGCTCAAATTCAACAGCTGAACAAGTCACTCAAGATTTCTCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGCGACTTCTGGAATCGGAGCTGAAACAGCAAGAGTGTTGGCAAAAAGAGGAGTGAGAGTGGTGATTGGTGCGAGGGACTTGAAAAAGGCGAGGGAAGTGAGAGAGAAAATTCAAAAGGAGAGTCCTGGTGCTGAGGTTATTCTGCTGGAGATCGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGCTCAGAGTTTTTAGCTTTAGAATTGCCCCTTAATATTCTCATGAATGTACTCTCAGAACTTGGAATTCTCGGAAGACAAAATCGAAATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACGAAAATGCTGGTAGAGAAAATGATAGATACGGCAAAGAAGTCAGTTATAATGGCACACGCGCATATGCTCAGTCAAAACTGGCAACAATTCTGCATGTGAAGGAAGTGGCAAGACAACTGAAGGAAAGGAATGCAAAGGTAACCATTAACGCAGTGCATCCAGGAATTGTGAAGACGGGAATTATCAGGGCGCATAAGGGCTTGATAACGGATTCCCTGTTTTTCATTGCATCCAAGTTACTGAAATCGATATCACAGGGAGCATCAACGACGTGTTATGTTGCGCTAAGTGGAAAAACGGAAGGAGTGAGTGGAAAATATTTTACAGATTGTAACGAGAGTAACTGCTCGAGTCTTGCAAACGAGGAATCAGAAGCAAAAAAGCTATGGAATGATACCTATGCATTGCTTCACAAACGGTTACGTCAAGCAACAAATTGA 888 0.4245 MKATLRYLAGIAGPSGFGSNSTAEQVTQDFSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPGAEVILLEIDLSSFASVQRFCSEFLALELPLNILMNVLSELGILGRQNRNDICYKLLRTFFVNENAGRENDRYGKEVSYNGTRAYAQSKLATILHVKEVARQLKERNAKVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCNESNCSSLANEESEAKKLWNDTYALLHKRLRQATN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01225 295 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Vian1g01225 295 PRINTS Glucose/ribitol dehydrogenase family signature 194 211 IPR002347 -
Vian1g01225 295 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Vian1g01225 295 PANTHER RETINOL DEHYDROGENASE 14 122 - -
Vian1g01225 295 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 263 IPR036291 -
Vian1g01225 295 Gene3D - 36 124 - -
Vian1g01225 295 Gene3D - 125 291 - -
Vian1g01225 295 Pfam short chain dehydrogenase 39 122 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01225 Vian-Chr1 13201759 13203931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01225 40 99 Lipid Metabolism Gene Families AT1G24470 38.333 2.45e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01225 - - gmx:100776567 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01225 1 13201759 13203931 Vian1g01225 1 13201759 13203931 ECH
Vian1g01225 1 13201759 13203931 Vian4g00884 4 12298158 12302441 PCT