Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00878 ATGGGCAAGAAAAGACATTCAGAACATAGCAATGATCCATTTTTTGTTGCAGCTCACAACAGAACAAGACAACAACCTCAATGCACACAACCAGACAATGATGGTGTCCCAGAAGAGACATGTGCACAACAAAACCATTCTCCAAAATTGGCTTCTTTCACTTCCCAAAATGCTCAACTTTTCATAACTATACCTTCTTTTGTTGCCTTGCTGCTCCTTGTTTCTTCAATTGCCCCAGCAATGTGCCACCCCCTGCAGGGTAACCACACTTTTAGGCCACACCATGAGCTCCTCAACTTGAGGAGAGTCAGAGCTCACTTGAAGAACATTAACAAGCCTCCTGTCAAGACAATTCAGAGTCCAGACGGTGATTTGATAGATTGTGTGTTATCTCACCAGCAACCTGCTTTTGACCATCCAAAGCTTAGAAATCACACACTGTTGGATCCACCAGAGAGGCCAAGGGGAAAAAACCATACCAAAGTAGATAGGGAAAGTGAGAGCTTTCAGCTGTGGAGTGATTCTGGTGAAACATGCCCAGATGGAACTGTACCAATCAGAAGAACAACAGAGGAGGATATTCTCAGAGCAAGTTCTATCCGAAGATTTGGAAGAAAACCAAGAGCTGTACGGAGAGACTCATCTGGCAGTGATCATGAGCATGCTGTTGTTTTCGTAAATGGGGATCAATACTATGGAGCAAGGGCAAGCATAAACGTGTGGGCACCAAGTGTGAGTGATGAATTTGAATTCAGCTTATCACAAATGTGGGTTATTGCTGGGTCCTTTGGCAAAGATCTGAATACCATAGAAGCTGGTTGGCAGGTGAGTCCACAACTGTATGGAGACAACTATCCAAGGTTCTTCACTTATTGGACAACTGATGCATATCAAACAACTGGGTGCTACAATTTACTCTGTTCTGGCTTTATTCAGACCAACAATAGGGTAGCAATAGGAGCAGCAATCTCCCCAAGATCTGCTTACAACAGAAGACAGTTTGATATTAGCTTAATGATTTGGAAGGATCCAAAGCATGGACATTGGTGGTTGGAGTTTGGATCAGGTGTACTAGTGGGATATTGGCCAGCAAACATGTTCAGTCACTTGAGGAGTCATGCAAGCATGGTGCAATTTGGAGGAGAAATAGTGAACAGTCGTTCAAGGGGTTACCACACTGCCACACAAATGGGAAGTGGCCATTTTGCCGATGAAGGGTTCAGAAAAGCAGCATACTTTAGAAACTTGCAAGTGGTTGATTGGGACAATAGCTTGCTTCCTCTTAGAAACATTCATCATTTGGCTGATCATTCCAATTGCTACAACATAAGGCAAGGAACCAGCAATGTTTGGGGAACTTACTTTTACTACGGTGGCCCTGGAAGAAATGTCAGATGCCCATGA 1404 0.4373 MGKKRHSEHSNDPFFVAAHNRTRQQPQCTQPDNDGVPEETCAQQNHSPKLASFTSQNAQLFITIPSFVALLLLVSSIAPAMCHPLQGNHTFRPHHELLNLRRVRAHLKNINKPPVKTIQSPDGDLIDCVLSHQQPAFDHPKLRNHTLLDPPERPRGKNHTKVDRESESFQLWSDSGETCPDGTVPIRRTTEEDILRASSIRRFGRKPRAVRRDSSGSDHEHAVVFVNGDQYYGARASINVWAPSVSDEFEFSLSQMWVIAGSFGKDLNTIEAGWQVSPQLYGDNYPRFFTYWTTDAYQTTGCYNLLCSGFIQTNNRVAIGAAISPRSAYNRRQFDISLMIWKDPKHGHWWLEFGSGVLVGYWPANMFSHLRSHASMVQFGGEIVNSRSRGYHTATQMGSGHFADEGFRKAAYFRNLQVVDWDNSLLPLRNIHHLADHSNCYNIRQGTSNVWGTYFYYGGPGRNVRCP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00878 467 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 103 463 - -
Vian4g00878 467 MobiDBLite consensus disorder prediction 141 185 - -
Vian4g00878 467 Pfam Neprosin activation peptide 117 224 IPR025521 -
Vian4g00878 467 MobiDBLite consensus disorder prediction 141 170 - -
Vian4g00878 467 FunFam Putative carboxyl-terminal proteinase 240 359 - -
Vian4g00878 467 MobiDBLite consensus disorder prediction 1 41 - -
Vian4g00878 467 MobiDBLite consensus disorder prediction 17 41 - -
Vian4g00878 467 Gene3D - 243 357 - -
Vian4g00878 467 Pfam Neprosin 250 460 IPR004314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00878 Vian-Chr4 12233736 12238584 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00878 - - gmx:100777828 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01222 1 13149948 13153065 Vian4g00878 4 12233736 12238584 ECH
Vian4g00878 4 12233736 12238584 Vian4g00878 4 12233736 12238584 ECH
Vian1g01222 1 13149948 13153065 Vian4g00878 4 12233736 12238584 PCT