Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01222 ATGGACATGAAGGGATATTCAGTTTCCTGGACAAAACATAAGAAAGAGCCATATTTTTCAGCTCGTCACACAAGAAGACAAGAACAATGCATACAAGCAAATGATGATACCCCAGAAGAAACAAGTTTACTAAATCATTCCCTCAAATTGGCTCTTTCCACTTCCCAAAATACTCTACTGCCTACGCTACCTGCCTTTGTTGCTTTCCTCCTACTTGTTACTTCAATTGGCACAGCATTTTCTCACCCCATTGCCTCCAATTCACCATTGCCATCATCACCCTCTCACCCCACTGTTAACAACACTTTCAGACCACCTCCGCTGTTGAAAAAGTTGAGGAGAATCAGAGCTCACCTCAACAAGATTAACAAGCCTCCTGTTAAAACAATTCAGAGTCCAGATGGGGATTTCATAGATTGTGTTTTGTCTCATCAGCAACCTGCTTTTGACCACCCTCTGCTCAGAGGGCAAAGACCATTGGATCCACCGGAAAGGCCAAAGGGCCACCCCAATGGGGAAAAAGTCATAGAGAGCTTTCAGCTTTGGACCGATTCTGGTGAAATATGCCCTGAAGGAACTGTTCCGATCAGAAGAACAACTGAACAAGATTTTCTACGAGCAAGCTCCATCAGAAGATTTGGAAGAAAAGTACGGAGGGACTCAACTGGCACTGGTCATGAGCATGCAGTTGTTTCTGTAAACGGAGATCAATACTACGGAGCAAAAGCAAGCATAAATGTATGGACACCCAGCGTAACCGATCCATACGAATTCAGTTTGTCACAGATATGGGTTATTGCTGGATCTTTTGGCAATGATCTGAATACCATAGAAGCTGGATGGCAGGTAAGTCCTGAGCTATACGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAACGGATGCATATCAAGCAACTGGATGCTACAATTTACTATGTTCAGGATTTGTCCAAACTAACAACAGGATAGCAATAGGGGCTGCAATCTCCCCAAGATCCATCTACAATGCCAGACAATTTGATATTGGCTTAATGGTTTGGAAGGACCCAAAGCATGGACATTGGTGGCTGGAATTTGGGTCGGGGCTACTTGTTGGGTACTGGCCAGCATACTTGTTCAGTCACTTGAGAAACCATGCTAGCATGGTACAATTTGGAGGAGAAATAGTGAATTCTCGTTCAAGGGGCTACCACACTGGCACTCAAATGGGTAGTGGCCATTTTGCAGAAGAAGGGTTTAGAAAAGCAGCCTATTTTAGAAATTTGCAAGTTGTGGATTGGGACAATAACTTGCTTCCTCTTTCAAATATTCACCAATTGGCTGACCATTCTAATTGCTATGACATTAGGGTTGGATCAAACAATGTTTGGGGAACTTACTTTTATTATGGAGGTCCTGGAAGGAACGTGAGATGTCCATGA 1425 0.4344 MDMKGYSVSWTKHKKEPYFSARHTRRQEQCIQANDDTPEETSLLNHSLKLALSTSQNTLLPTLPAFVAFLLLVTSIGTAFSHPIASNSPLPSSPSHPTVNNTFRPPPLLKKLRRIRAHLNKINKPPVKTIQSPDGDFIDCVLSHQQPAFDHPLLRGQRPLDPPERPKGHPNGEKVIESFQLWTDSGEICPEGTVPIRRTTEQDFLRASSIRRFGRKVRRDSTGTGHEHAVVSVNGDQYYGAKASINVWTPSVTDPYEFSLSQIWVIAGSFGNDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSIYNARQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRNHASMVQFGGEIVNSRSRGYHTGTQMGSGHFAEEGFRKAAYFRNLQVVDWDNNLLPLSNIHQLADHSNCYDIRVGSNNVWGTYFYYGGPGRNVRCP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01222 474 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 113 470 - -
Vian1g01222 474 Pfam Neprosin activation peptide 129 231 IPR025521 -
Vian1g01222 474 FunFam Putative carboxyl-terminal proteinase 247 366 - -
Vian1g01222 474 MobiDBLite consensus disorder prediction 87 106 - -
Vian1g01222 474 MobiDBLite consensus disorder prediction 157 171 - -
Vian1g01222 474 MobiDBLite consensus disorder prediction 151 171 - -
Vian1g01222 474 Gene3D - 251 360 - -
Vian1g01222 474 Pfam Neprosin 257 467 IPR004314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01222 Vian-Chr1 13149948 13153065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01222 - - gmx:100782442 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01222 1 13149948 13153065 Vian4g00878 4 12233736 12238584 ECH
Vian1g01222 1 13149948 13153065 Vian1g01222 1 13149948 13153065 ECH
Vian1g01222 1 13149948 13153065 Vian4g00878 4 12233736 12238584 PCT