Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00874 ATGGGTTCCATTTGCATGTGCCATTTTATTCTACCACTAACCATTGCTGTTGTTGTAACTCTAGGAGACAACACAGCAGAATCCTACTGGCTTCTAAAGATTAAATCAGAACTGGTTGATCCATCAGGAGCCCTGAGAAACTGGTCTCCAACTACTCATTTTTGTAGCTGGAATGGAATAACATGTGATGTTGATGAGGCACATGTGGTAGGCCTTAATTTGTCTGGCTCAGGAATATCAGCTTCCATTCCAGGTGAGTTCAGTCACCTAATTTCTCTTCAAGCACTTGATTTGTCTTCAAATAACCTCACAGGCTCCATCCCTTCTGAACTTGGGCAGCTTCAAAATCTAAGAATACTGCTTCTGTACTCAAATTATCTCTCCAGCAATATTCCTGAAGAGATAGGTAATTTGAGTAAGTTGCAAGTTCTTAGACTAGGAGATAACAGTTTGGCAGATGAAATCCCACTTAGCATTGGCAACTTGAGTGAGTTGACAGTGTTGGGTGTAGCCAACTGCAACTTAACTGGAAGCATACCTGTTGAGGTTGGTAACTTGAAGCATCTTGTGTCTCTTGATTTACAAATGAACAATCTTAGCGGATTCATACCTAAAGAGATTCAAGGCTGTCAAGAGCTCCAGAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCAATTGGGTCTCTTAAATCATTGAGAATTTTGAACCTGGCTAATAACACTCTATCTGGATCAATTCCTACCTCTTTGGGTCTTCTCTCCAATTTGACATACCTCAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCTTCAGAGCTTAACAGTTTGAGCCAGCTACAGAAACTTGACTTATCCAGAAACAACCTTTCTGGATCACTGACTCTCCTTAATGTCAACTTACAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTATTCCATATAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTGGCTAGGAATAAGCTTTCTGGAGGATTTCCCTTGGGGATACTCAACTGCTCCTCAATCCAACAGGTTGACCTTTCTGACAACAGTTTTGAAGGTGAGCTTCCATCCAACCTGGACAAACTACAGAACCTCACAGATCTTATGCTCAACAACAACAGCTTCATTGGATCTCTACCTCCAGTAATTGGAAATATCAGTAGCTTGAGAAGTCTTTTCTTGTTTGGAAACTCTTTCACAGGAAAAATCCCAGTTGAGATTGGAAGGCTAAAGAGGTTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCTATTCCAAGAGAGTTAACAAACTGCACAAGCTTAACTGGAATTGACTTCTTTGGAAACCATTTTTATGGCCCCATTCCAGAGACTATAGGTAAGCTAAAGGATCTAACTGTTCTCCATTTAAGGCAAAATGATCTGTCAGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCATTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTTTCACAACTTAGTACCATTACCCTTTACAACAACAACTTTGATGGACCACTACCTGATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAATTTTTCCAATAACAAGTTCAGAGGTAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTGGACTTGACAAACAACAGCTTCTCAGGTTCCATCCCTTCTATTCTAGCCAACTCTGGAGATCTCACCCGTCTCAGACTTGCAAACAATTATCTCACAGGAACCATTCCTTCTGAACTTGGCCACCTCACTAAGCTAAACTTCCTTGATTTATCATTCAACAACTTAACAGGACATGTGCCACCTCAACTCTCCAACTGCAAGAAAATTGAACACCTTCTACTGAACAATAACAGATTGAGTGGCCAAATGTTGCCGTGGTTAGGAAGCTTGCAAGAACTTGGTGAGCTGGATCTCTCATTCAACAACTTCCATGGAAGAGTTCCTGCTGAGCTTGGAGGCTGCTCAAAGTTGCTTAAGCTTTCTCTCCATCACAACAATCTCTCTGGAGAAATCCCTCTAGAGATTGGAAACCTTACTTCACTCAACGTCTTCAACTTGCAAAGGAATAGTCTCTCTGGCCACATTCCATCAACAATTCAGCAATGCTCTAAGCTGTATGAGCTAAGGCTCTCGGAGAACTTCCTCTCAGGTATTATACCAGTTGGACTAGGAGCAGTCACTGAGTTGCAAGTCATATTGGACCTCAGTAGAAACCTCTTTTCTGGTGAGATTCCGTCATCTCTGGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACCAGCCTTCATGTGCTAAATCTCTCAAATAACCATCTTCATGGCCTCATTCCATCAACCTTTTCAGGGTTCCCACTAAGCTCTTTTCTGAATAATGACCACTTGTGTGGCCCTCCACTAGCATTATGCTCAGAAGCTACGAGAATGAAGCTGTCAAACTCACAAGTAGCAGCAATCATAGTAGCCATTGTCCTTACTTCAACTCTGATATGCTTAGTATTATTGTATATAATGTTGAGAATCTGGTGCAACTGGAAAAAGGTAGCTGTTTCAAGTGAAGATGGTGGCATGGTTGAGCAGAAGACAAGAAATGGAGAGTACTGGAACATGAATTCCCCTGAGCTGTTTTCTTCACCAGATATACAAATTTCTGCTACACCTTGCATTTGTAATCTCAAAATTGATGCAGCAGCCAGGGAAAATACCTTGGTTAGATAA 2868 0.4111 MGSICMCHFILPLTIAVVVTLGDNTAESYWLLKIKSELVDPSGALRNWSPTTHFCSWNGITCDVDEAHVVGLNLSGSGISASIPGEFSHLISLQALDLSSNNLTGSIPSELGQLQNLRILLLYSNYLSSNIPEEIGNLSKLQVLRLGDNSLADEIPLSIGNLSELTVLGVANCNLTGSIPVEVGNLKHLVSLDLQMNNLSGFIPKEIQGCQELQNFAASNNMLEGEIPSSIGSLKSLRILNLANNTLSGSIPTSLGLLSNLTYLNLLGNKLNGEIPSELNSLSQLQKLDLSRNNLSGSLTLLNVNLQNLETMVLSDNALTGIPYNFCLRGSKLQQLFLARNKLSGGFPLGILNCSSIQQVDLSDNSFEGELPSNLDKLQNLTDLMLNNNSFIGSLPPVIGNISSLRSLFLFGNSFTGKIPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTSLTGIDFFGNHFYGPIPETIGKLKDLTVLHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQLSTITLYNNNFDGPLPDSLSLLRNLKIINFSNNKFRGSIFPLTGSNSLTVLDLTNNSFSGSIPSILANSGDLTRLRLANNYLTGTIPSELGHLTKLNFLDLSFNNLTGHVPPQLSNCKKIEHLLLNNNRLSGQMLPWLGSLQELGELDLSFNNFHGRVPAELGGCSKLLKLSLHHNNLSGEIPLEIGNLTSLNVFNLQRNSLSGHIPSTIQQCSKLYELRLSENFLSGIIPVGLGAVTELQVILDLSRNLFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHVLNLSNNHLHGLIPSTFSGFPLSSFLNNDHLCGPPLALCSEATRMKLSNSQVAAIIVAIVLTSTLICLVLLYIMLRIWCNWKKVAVSSEDGGMVEQKTRNGEYWNMNSPELFSSPDIQISATPCICNLKIDAAARENTLVR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00874 955 ProSiteProfiles Leucine-rich repeat profile. 92 114 IPR001611 GO:0005515
Vian4g00874 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 565 857 - -
Vian4g00874 955 FunFam Uncharacterized protein 181 275 - -
Vian4g00874 955 SUPERFAMILY L domain-like 571 861 - -
Vian4g00874 955 ProSiteProfiles Leucine-rich repeat profile. 236 258 IPR001611 GO:0005515
Vian4g00874 955 Pfam Leucine rich repeat 571 630 IPR001611 GO:0005515
Vian4g00874 955 SUPERFAMILY L domain-like 28 297 - -
Vian4g00874 955 PRINTS Leucine-rich repeat signature 93 106 - -
Vian4g00874 955 PRINTS Leucine-rich repeat signature 282 295 - -
Vian4g00874 955 Gene3D Ribonuclease Inhibitor 498 857 IPR032675 -
Vian4g00874 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 468 564 - -
Vian4g00874 955 ProSiteProfiles Leucine-rich repeat profile. 812 833 IPR001611 GO:0005515
Vian4g00874 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 24 180 - -
Vian4g00874 955 Pfam Leucine Rich Repeat 788 808 IPR001611 GO:0005515
Vian4g00874 955 Pfam Leucine Rich Repeat 812 834 IPR001611 GO:0005515
Vian4g00874 955 Gene3D Ribonuclease Inhibitor 301 497 IPR032675 -
Vian4g00874 955 FunFam Uncharacterized protein 372 467 - -
Vian4g00874 955 SMART LRR_typ_2 186 209 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 90 114 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 665 689 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 810 833 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 138 162 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 282 305 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 617 641 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 713 737 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 474 498 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 378 402 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 786 809 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 234 258 IPR003591 -
Vian4g00874 955 SMART LRR_typ_2 306 329 IPR003591 -
Vian4g00874 955 Gene3D Ribonuclease Inhibitor 182 300 IPR032675 -
Vian4g00874 955 Pfam Leucine rich repeat N-terminal domain 30 63 IPR013210 -
Vian4g00874 955 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 767 902 - -
Vian4g00874 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 276 371 - -
Vian4g00874 955 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Vian4g00874 955 SUPERFAMILY L domain-like 330 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00874 Vian-Chr4 12165480 12168347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00874 158 877 Receptor kinase-like Gene Family AT5G46330 34.354 4.34e-108 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00874 - - gmx:100802757 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00874 4 12165480 12168347 Vian4g00874 4 12165480 12168347 ECH
Vian1g01212 1 13021499 13024408 Vian4g00874 4 12165480 12168347 PCT