Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01212 ATGAAACTCATACCTGTAAAACATTCTGCAATGGGTTCCGTTTGGATGTGCCATTTCTTTCTGTTACTGTCCACACTAGATACTTCTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTGGCTTATCAGAATTAAATCAGAGTTGGTAGATCCATCGGGAGCACTTGGCAACTGGTCTCCGACAGCTCATGTCTGCAACTGGAATGGAATAACATGTACAGTTGATCAGGAATATGTTATTGGCCTGAATCTGTCTGGTTCAGGAATATCCGGTTCCATTTCAGTTGAGTTCAGACACCTCTCTTTTATTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTTCGGAGCTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATATCTCTGGGAACATTCCTTCAGACATAGGTAACATGAGGAAGTTACAAATTCTTAGAATAGGTGACAACATGTTGACTGGTGAAATTCCACCTAGTATTGCCAATATGAGTGAATTGACAGTTTTGGCAATAGGATACTGCCACTTGAATGGAAGCATACCAGTTGGGATCGGTAAATTGAAACATCTAATATCCCTTGATTTAGAAATGAACAGACTCAGTGGCCCCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACATACCTTTCTCTATGGGGTCGCTTAAATCATTAAAAATTCTGAACCTGGCCAATAACAGTTTGTCTGGGTCAATTCCTCCTGCTTTGAGTCATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTACATGGACAAATCCCTTCTGTGCTTAATAGTCTGATTCAGCTGCAGAAGTTGGACTTGTCCAAAAACAACCTCTCTGGATCAATACCTCTCCTTAATGTAGAATTGCAGAGTCTTGAAACTCTTGTTCTGTCTGATAATGCTCTGACTGGTAGCGTTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCAGCAACTCTTTTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCTTTGGAGTTGCTCAACTGCCCCTCAATCCAACAGTTGGACCTTTCTGATAACAGTTTTGAAGGAGAACTTCCTGCAAGCCTGGACAAACTGAATAACCTCACAGATCTTGTTCTCAACAACAACAGCTTTGTTGGACCTCTCCCTCCTGAAATTGGAAACATTAGTAGCTTAGAGGGTCTTTTCCTATTTGGTAACTTCTTGACAGGTAAAATTCCAACGGAGATTGGAAGGCTGCAGAGATTGAGCACCATTTACCTCTATGACAACCAGATGTCTGGACTCATACCAAGAGAGATAACAAACTGCACAAGCTTAGAGGAAATTGACTTCTTTGGAAATCACTTTACAGGGCCCATTCCAGAGACTATAGGTAAGCTCAAGAAATTAGTTGTTCTGCATCTTAGGCAGAATGACTTGTCTGGTCCGATCCCACCAAGCATGGGGTACTGTAAAAACCTTCAGATATTGGCCTTAGCAGATAACATATTGTCTGGTTCCATTCCATCTACATTCAGTTACCTCTCGGAGCTCACCAAAATTACCCTTTACAACAACTCCTTTGAAGGACCTCTCCCTCATTCACTCTCTTCTCTCAAAAGCCTGAAAATCATCAACTTTTCACACAACAAGTTCAGTGGAAGTTTCTTTCCTCTCACTGGTTCAAATTCTCTAACCATTCTGGACTTGACCAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCAGCCGTCTCAGACTTGGACAAAATTATCTCACTGGAAGCATTCCTTCTGAATTTGACCAACTCACTGAGCTCAATTTTCTTGATTTATCATTCAACAATTTAACAGGAGAGATGCCACCTCAACTCTCAAACTCCAAGAAAATTGAACACATCCTCGTGAGTAACAACAGGTTGAGTGGCAAATTACCTGTTTGGTTGGGAAGCTTACAAGAACTTGGTGAGCTAGATCTCTCATACAATAACTTCAGTGGTAGGGTACCTTCTGAGCTTGGTAACTGCTCAAAATTGCTCAAGCTTTCTCTCCATCACAACAATCTGTCCGGTGAAATCCCCTTAGAGCTTGGAAACCTCACTGCCCTCAATGTCTTCAATTTGCAAAGGAACGGATTCTCTGGCCCCATTCCTCCGACAATTCAGCAATGCACAAAACTGTATGAGCTTAGGCTCTCAGAGAACTTTTTAACAGGTACCATACCAGTTGAGCTAGGAGGGCTTGCTGAGTTGCAAGTGATTTTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCATCTCTAGGAAACCTCGTGAAGCTAGAAAGACTCAACCTCTCTTTCAACCAACTTGAAGGGAAAGTTCCTCCTTCACTGGGCAAACTCACAAGCCTGCACGTGTTGAATCTCTCAAACAACCATCTTGAAGGCCAGATTCCTCCAACATTTTCAGGATTCCCACTAAGCTCATTCCTGAACAATCACGGCTTCTGTGGCCCACCACTGAGATCATGCTCTGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGCAATCATTGTGGCCATTGTGTTTACTTCCACAGTGATATGCTTAGTGATGTTGTACATCATGCTCAGGATCTGGTGCAACTGGAGAAAAGTTGCCATTTCGAGTGCAGAAGGTGGCACTGTTGCCCATAAGGAAAGAAATGGAGAGTATTGGAATATGAATTCATTTGGGTTGATTCCTTCACCAGATAAGCAGAATTCAGCAGCATCTTCCTTCTATAATCTTAAAATGGAGACCATGGAAAATGCACATATGTAA 2910 0.4216 MKLIPVKHSAMGSVWMCHFFLLLSTLDTSFIATMANNATDSYWLIRIKSELVDPSGALGNWSPTAHVCNWNGITCTVDQEYVIGLNLSGSGISGSISVEFRHLSFIQTLDLSSNSLSGSIPSELGQLQNLRILQLYSNDISGNIPSDIGNMRKLQILRIGDNMLTGEIPPSIANMSELTVLAIGYCHLNGSIPVGIGKLKHLISLDLEMNRLSGPIPEEIQGCEELQNFAASNNMLEGDIPFSMGSLKSLKILNLANNSLSGSIPPALSHLSNLTYLNLLGNKLHGQIPSVLNSLIQLQKLDLSKNNLSGSIPLLNVELQSLETLVLSDNALTGSVPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCPSIQQLDLSDNSFEGELPASLDKLNNLTDLVLNNNSFVGPLPPEIGNISSLEGLFLFGNFLTGKIPTEIGRLQRLSTIYLYDNQMSGLIPREITNCTSLEEIDFFGNHFTGPIPETIGKLKKLVVLHLRQNDLSGPIPPSMGYCKNLQILALADNILSGSIPSTFSYLSELTKITLYNNSFEGPLPHSLSSLKSLKIINFSHNKFSGSFFPLTGSNSLTILDLTNNSFSGPIPSTLANSRNLSRLRLGQNYLTGSIPSEFDQLTELNFLDLSFNNLTGEMPPQLSNSKKIEHILVSNNRLSGKLPVWLGSLQELGELDLSYNNFSGRVPSELGNCSKLLKLSLHHNNLSGEIPLELGNLTALNVFNLQRNGFSGPIPPTIQQCTKLYELRLSENFLTGTIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLVKLERLNLSFNQLEGKVPPSLGKLTSLHVLNLSNNHLEGQIPPTFSGFPLSSFLNNHGFCGPPLRSCSESTAQGKMQLSNTQVAAIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISSAEGGTVAHKERNGEYWNMNSFGLIPSPDKQNSAASSFYNLKMETMENAHM 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01212 969 Pfam Leucine Rich Repeat 802 824 IPR001611 GO:0005515
Vian1g01212 969 Pfam Leucine Rich Repeat 826 848 IPR001611 GO:0005515
Vian1g01212 969 Pfam Leucine Rich Repeat 249 271 IPR001611 GO:0005515
Vian1g01212 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 482 578 - -
Vian1g01212 969 SMART LRR_typ_2 488 512 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 103 127 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 824 847 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 631 655 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 319 343 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 199 222 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 247 271 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 679 703 IPR003591 -
Vian1g01212 969 SMART LRR_typ_2 800 823 IPR003591 -
Vian1g01212 969 PRINTS Leucine-rich repeat signature 298 311 - -
Vian1g01212 969 PRINTS Leucine-rich repeat signature 824 837 - -
Vian1g01212 969 Gene3D Ribonuclease Inhibitor 37 190 IPR032675 -
Vian1g01212 969 Gene3D Ribonuclease Inhibitor 482 579 IPR032675 -
Vian1g01212 969 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Vian1g01212 969 PANTHER POLYGALACTURONASE INHIBITOR 1 584 692 - -
Vian1g01212 969 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Vian1g01212 969 FunFam Uncharacterized protein 194 288 - -
Vian1g01212 969 FunFam Uncharacterized protein 386 481 - -
Vian1g01212 969 SUPERFAMILY L domain-like 347 575 - -
Vian1g01212 969 ProSiteProfiles Leucine-rich repeat profile. 249 272 IPR001611 GO:0005515
Vian1g01212 969 Gene3D Ribonuclease Inhibitor 385 481 IPR032675 -
Vian1g01212 969 SUPERFAMILY L domain-like 579 864 - -
Vian1g01212 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 37 193 - -
Vian1g01212 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 579 871 - -
Vian1g01212 969 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 289 385 - -
Vian1g01212 969 SUPERFAMILY RNI-like 85 406 - -
Vian1g01212 969 Gene3D Ribonuclease Inhibitor 580 875 IPR032675 -
Vian1g01212 969 Gene3D Ribonuclease Inhibitor 287 384 IPR032675 -
Vian1g01212 969 Gene3D Ribonuclease Inhibitor 191 286 IPR032675 -
Vian1g01212 969 Pfam Leucine rich repeat 514 573 IPR001611 GO:0005515
Vian1g01212 969 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01212 Vian-Chr1 13021499 13024408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01212 53 868 Receptor kinase-like Gene Family AT5G46330 35.844 4.20e-130 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01212 - - gmx:100818792 1655.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01212 1 13021499 13024408 Vian1g01212 1 13021499 13024408 ECH
Vian1g01212 1 13021499 13024408 Vian4g00874 4 12165480 12168347 PCT