Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00860 ATGATGAATTCGTTGTTGAGCGCCAAGGCATGCGTGGGTGTGCGGTCACCGATTATAGCGAACTCCGAGGAAAGGAGTACGAGGAAGATGATACAAAACGTGAATTGTAGGAACAGTAGGAATTGGAGGAATGTGGCTGTGTCGTGCGGTTCGGAGAAGAACGGTAACGATGGAATTGACGCGAGTGAAGGGTTGAATTCGGGGTCGTTTTTGTCCCCGAGTCACAATTACGCGATCTTGAAGCACCGGATGGAGATAGCGGCAAAGTCCGAGTATTATGAAGAGGCTGCAAGGCTTCGTGACTCGCTCAAATGCTTCGAGGACGACGTTCCTGTTCTTCGTCTGCGGAGGCTGTTGAAAGAAGCTGTTGCTGATGAGAGATTTCAGGATGCAGCTATATATCGTGATCAGCTCAAAGAAATTGCTCCACATTCTCTCTTAAAATGTTCAAGTGATTCTACAACCTTGGGAATTCGGGTACAAGTTAAGAGTGTATATTTAGAGGGCAGAAGTCAACCAACAGAAGAGGTATATTTCTTTGAATATAAAATAAGAATTACCAATAACACAAACCGCCCTGTTCAACTTCTGAGAAGGCATTGGATTATAACTGATGCTAATGGAAAAACTGAAAATTTCTGGGGAATTGGGGTTGGTGGTGAACAGCCAGCTATATTTCCTAGAACTAGTTTTGAATTCTCTTCTACATGCCCTTTAAACGCACAAAATGGTAGAATGGAGGGTGACTTTGAGCTGATACATGTTGATCGAGTAGGTCCAAGAGCATTTAACGTGGCTGTTGCCCCATTTTCTCTCTCTCTACTTGGAGATGATGATGAGGATGGTGAAACTATCTGA 858 0.4406 MMNSLLSAKACVGVRSPIIANSEERSTRKMIQNVNCRNSRNWRNVAVSCGSEKNGNDGIDASEGLNSGSFLSPSHNYAILKHRMEIAAKSEYYEEAARLRDSLKCFEDDVPVLRLRRLLKEAVADERFQDAAIYRDQLKEIAPHSLLKCSSDSTTLGIRVQVKSVYLEGRSQPTEEVYFFEYKIRITNNTNRPVQLLRRHWIITDANGKTENFWGIGVGGEQPAIFPRTSFEFSSTCPLNAQNGRMEGDFELIHVDRVGPRAFNVAVAPFSLSLLGDDDEDGETI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00860 285 ProSiteProfiles ApaG domain profile. 152 279 IPR007474 -
Vian4g00860 285 SUPERFAMILY ApaG-like 154 273 IPR036767 -
Vian4g00860 285 ProSiteProfiles UVR domain profile. 109 144 IPR001943 GO:0005515
Vian4g00860 285 Pfam UvrB/uvrC motif 114 141 IPR001943 GO:0005515
Vian4g00860 285 PANTHER OS05G0170800 PROTEIN 25 279 - -
Vian4g00860 285 Pfam ApaG domain 170 252 IPR007474 -
Vian4g00860 285 Gene3D ApaG domain 148 279 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00860 Vian-Chr4 11917622 11920013 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00860 - K06195 gmx:100799029 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00860 4 11917622 11920013 Vian4g00860 4 11917622 11920013 ECH
Vian1g01206 1 12973356 12979970 Vian4g00860 4 11917622 11920013 PCT