Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01206 ATGCAATCGTTATCGTTAAGTATGAGTCTGAGGAGTGGTAGTGCAGCGAATTTACTGTTGCTGGGTTCGGAGGCGAGAGTGAGAAGAAGAAGCAGAAGTGTGGTCGTAGCGTGTGCTTCGGAGGGAGACAGTGGTAGCAGTAGCACCAGCTCCTTTCTTTCTCGGACCCAAACCTACGCTCTTCTCAAGCAACAGTTGCAAGTAGCTGCTAAATCTGAGGATTACAAGGAAGCTGCTAGAATTCGAGATTCGTTGAAGTTGTTTGAGGAAGAGGAGCCTGTGTTGCGTCTGAGGAGACTATTGAAGGAAGCAATTGCGGAAGAGAGATTCCAGGATGCTGCTAGTTATCGTGATGAGCTAAAAAAAATTGCCCCACACTCTCTTTTAAAATGCTGCAGTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGTTATACTTCTTTGCATATAGAATAAGAATTACCAATAACTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCTAATGGGAAGACGGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCGTTAATACTTCCTGGGAATAGTTTTGAATATTCTTCAGCCTGCCCACTGAGCACACCAAATGGAAGAATGGTAAGATTTACTTTTGTTGCAATTTCCTGGGATAATCAGAAGCATAAGATATTTCAATACTTTAGATGCGTCATCATCACATCGCACATAAAACCAGGGTTTTGTATCATAATGCAGGAAGGTGACTATGAAATGATCCATGTGGAAAGAGTAGGCTCACGATCATTCAATGTGACCATAGCCCCGTTTTCTCTCTCTCTCCTTGGAGATGATGAAGGTTGTAATATTTGA 915 0.4284 MQSLSLSMSLRSGSAANLLLLGSEARVRRRSRSVVVACASEGDSGSSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEEEEPVLRLRRLLKEAIAEERFQDAASYRDELKKIAPHSLLKCCSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGKTENVWGIGVVGEQPLILPGNSFEYSSACPLSTPNGRMVRFTFVAISWDNQKHKIFQYFRCVIITSHIKPGFCIIMQEGDYEMIHVERVGSRSFNVTIAPFSLSLLGDDEGCNI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01206 304 ProSiteProfiles UVR domain profile. 91 126 IPR001943 GO:0005515
Vian1g01206 304 ProSiteProfiles ApaG domain profile. 134 300 IPR007474 -
Vian1g01206 304 ProSiteProfiles UVR domain profile. 56 91 IPR001943 GO:0005515
Vian1g01206 304 Pfam ApaG domain 152 229 IPR007474 -
Vian1g01206 304 Gene3D ApaG domain 130 258 IPR036767 -
Vian1g01206 304 Pfam UvrB/uvrC motif 96 123 IPR001943 GO:0005515
Vian1g01206 304 SUPERFAMILY ApaG-like 136 229 IPR036767 -
Vian1g01206 304 PANTHER OS05G0170800 PROTEIN 39 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01206 Vian-Chr1 12973356 12979970 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01206 - K06195 gmx:100784413 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01206 1 12973356 12979970 Vian1g01206 1 12973356 12979970 ECH
Vian1g01206 1 12973356 12979970 Vian4g00860 4 11917622 11920013 PCT