Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00855 ATGATGAGAATCGCTGCAAGCGCGAAGAGACTTCTTCCAACGCCGTCGTTGGAGGTGTCACCGGTGGGAGTTAGGGTTCTACCGCGCCTCTACCACGAGAGGGTGGTGGACCACTACGACAACCCCCGCAATGTTGGATCCTTCGACAAGAACGACCCCACTGTGGGAACTGGTCTTGTCGGGGCACCCGCGTGTGGCGACGTAATGAAACTCCAAATTAAGGTTGACGAGAAAACTGGAAAGATCGTCGATGCTCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTCTGTCAATTAAAAACACGACTTCTAGTCCTGCTAGTGAAATTGCGAAGCATCTTTCACTTCCACCCGTCAAGCTTCACTGCAGCATGCTTGCAGAGGATGCCATAAAAGCAGCTGTTAAGGATTATGAAGCTAAACGTGCCTCAGCAACTACTGATGGGCAGGGAACAACTTAA 516 0.5097 MMRIAASAKRLLPTPSLEVSPVGVRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDEKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTTSSPASEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASATTDGQGTT 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00855 171 FunFam Iron-sulfur cluster assembly scaffold protein IscU 29 163 - -
Vian4g00855 171 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 11 165 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vian4g00855 171 SUPERFAMILY SufE/NifU 30 160 - -
Vian4g00855 171 NCBIfam Fe-S cluster assembly scaffold IscU 31 160 IPR011339 GO:0005506|GO:0016226|GO:0051536
Vian4g00855 171 Pfam NifU-like N terminal domain 31 161 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vian4g00855 171 CDD IscU_like 30 152 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vian4g00855 171 Gene3D - 30 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00855 Vian-Chr4 11687746 11689072 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00855 K22068 - gmx:100806169 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00855 4 11687746 11689072 Vian4g00855 4 11687746 11689072 ECH
Vian1g01201 1 12927373 12929264 Vian4g00855 4 11687746 11689072 PCT