Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01201 ATGCTGAGAGTGGGCGCAAAGAGGGTTTTAGGAACGACGTCGTTGGGCGCTAGGGTTTCGTCGCGGTTATACCACGAGCGGGTTGTGGATCATTATGACAATCCCCGGAATGTTGGATCTTTCGACAAGAGCGACCCGAGCGTTGGGACGGGTTTGGTCGGGGCACCGGCTTGCGGTGATGTCATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGAAAAATCGTCGATGCTCGATTCAAGACTTTTGGGTGTGGCTCTGCCATTGCTTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAAGCAAATGGAGGAAGTTCTGTCCATAAAAAATACTGAGATTGCAAAGCATCTTTCGCTTCCACCAGTTAAGCTCCACTGCAGCATGCTTGCTGAAGATGCCATCAAAGCGGCTGTTAAGGATTATGAAGCTAAGCGTGCTAAGGCAACTGCTACCGGAGAGGCAGCAACAGAAGAGACGGCAGCCACTGCATGA 498 0.5181 MLRVGAKRVLGTTSLGARVSSRLYHERVVDHYDNPRNVGSFDKSDPSVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKATATGEAATEETAATA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01201 165 CDD IscU_like 23 139 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vian1g01201 165 FunFam Iron-sulfur cluster assembly protein 24 163 - -
Vian1g01201 165 SUPERFAMILY SufE/NifU 23 148 - -
Vian1g01201 165 Gene3D - 23 165 - -
Vian1g01201 165 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 16 155 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vian1g01201 165 NCBIfam Fe-S cluster assembly scaffold IscU 24 147 IPR011339 GO:0005506|GO:0016226|GO:0051536
Vian1g01201 165 Coils Coil 140 160 - -
Vian1g01201 165 Pfam NifU-like N terminal domain 24 149 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01201 Vian-Chr1 12927373 12929264 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01201 K22068 - gmx:100812566 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01201 1 12927373 12929264 Vian4g00855 4 11687746 11689072 PCT