Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00851 ATGCTTCGGCGGCCACCGCAAGGGTCCGGCACAGGGAAGGAAGCGAGTGGGGGGAATCGAGACTCAAAACGCGCCCTTAGTTGGCTGGGTCGGAGGGAAGACGATGTCGTCTTCGTTTCGTCTGTGAACGCCGGAGCTGCGGCGACCTTCAATGGGAACTGGTTGGGTGGAAGAAATACGACAGTGTTCAACGTTGTCCATTGCGAGAGCACTGTTTCCGGCTCGGGAATGGTGCCGCCAGAACACTCTTCTTTCGTTAGGCTTCCGGAAGCTCATGTGCTTCACGACCTTATCAAGACACGCTTCATTCGTGGGCTGGGCCTGCTCGGGCCCAAAACGGAGGTTCTTTCCGTTCACCGAAACGCTTGTTCCGGCGTCGTTTCCCAGGCGCGGCTCCACTCGTTTCTGCTTCTCGCTAGGGCCGTGGCGGAGCTGCGTGAAGGGAATGCCAACGTCAGGTACGCTTGGTACGGAACTCGCGGCGAAGACGACGTAAACGACATCGTTTCTCACGGGTTTTCCCACGCCCACGGTCCTCAACTACTTCTCTCCCCCGATGACGCTCCTCTCCAAAGTGTTAGAGAGTGTGTGGTTGGGAAAGACGGTGTGAGGCACGCACTACTGTGCCGCGTTATTCTAGGGAGATTGGAGCTTGTTGACGATGGCACAGAACAATGTTATCCAAGTTCCGAGAAGTATGATTCTGGGGTGGATAGTTTTTCAGCTCCCAGCAAGTACATGATTTGGAGTAATCGCATGAACACTCATGTCTTGCCTGCATATGTTGTAAGCTTCAGGGTTCCTCCTTTCAAAGGCTTTGAGAAGAGTGAAGAAGAATTTTTGAGACCTACTTCCCCTTGGATGCCATTCCCAACTCTGATTTCTGCGCTTTCAAAGGTTTTGGCTGCTCGTGATATTGCTCTAATCTCTAAGTTCTACAAAGATAAAAGAGAGAAGAAGATTTCACGACAGGAACTTATAAAAAGAGTGAGACAAATAGCAGGTGACAAGTTGCTGTTTGCAGTCATCAAATCTTTCAGAGAAAAGAATTTAGCAACCATCCTCGACTGTTTAGACCTGGATTTAGAGATGAAACGTTATAAAATTGTGAAGAAAACTGTGTATCAAATCCATGCTCGTTCGAGCTCAGCCTCCCCAATAAGCACATGGTTTTGGACTGCTGCTTATCCTTCATTGTAA 1200 0.4992 MLRRPPQGSGTGKEASGGNRDSKRALSWLGRREDDVVFVSSVNAGAAATFNGNWLGGRNTTVFNVVHCESTVSGSGMVPPEHSSFVRLPEAHVLHDLIKTRFIRGLGLLGPKTEVLSVHRNACSGVVSQARLHSFLLLARAVAELREGNANVRYAWYGTRGEDDVNDIVSHGFSHAHGPQLLLSPDDAPLQSVRECVVGKDGVRHALLCRVILGRLELVDDGTEQCYPSSEKYDSGVDSFSAPSKYMIWSNRMNTHVLPAYVVSFRVPPFKGFEKSEEEFLRPTSPWMPFPTLISALSKVLAARDIALISKFYKDKREKKISRQELIKRVRQIAGDKLLFAVIKSFREKNLATILDCLDLDLEMKRYKIVKKTVYQIHARSSSASPISTWFWTAAYPSL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00851 399 ProSiteProfiles PARP catalytic domain profile. 70 287 IPR012317 GO:0003950
Vian4g00851 399 Gene3D - 84 267 - -
Vian4g00851 399 ProSiteProfiles RST domain profile. 281 352 IPR022003 -
Vian4g00851 399 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g00851 399 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 87 349 IPR044964 -
Vian4g00851 399 SUPERFAMILY ADP-ribosylation 128 267 - -
Vian4g00851 399 Pfam RCD1-SRO-TAF4 (RST) plant domain 282 347 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00851 Vian-Chr4 11511978 11516864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00851 - - vra:106760244 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00851 4 11511978 11516864 Vian4g00851 4 11511978 11516864 ECH
Vian1g01196 1 12879403 12881737 Vian4g00851 4 11511978 11516864 PCT