Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01196 ATGGACAGACCCATTCATCATTCATCGGACACGCCTACTTATGTTTCGGATGACGAATCAGTGGTTTCCGATTGCGAGAGCGGGGTTTCCGGCGACGAGGGGACGTTTTCCGGAGCCTTTGTGCCGGCGCCCCAAGACGGCCTTCGTGTCCGGACTAGATTCGTCCGGAGCTTGGTCCTTAACGGGTTGATGCCCGAGGTGTTGTCGATTGCCAAGAACGCGCATTCCTCCGTCATGGCGCGTGCGCGTGCTCAGTGCTTTCAGATTTTTGCTCGTGCGGTGGCGGAATTGCACGAGGGTCGTGCTAACGTGAGGTTCGCTTGGTACGGTGCGTCCGGTAAGGAAGAGATAGCTGATATTGCCCAACATGGTTTCGGCCACGCGCACTGTAACGGCCTTCGTCTCTCTCCTCTGGATTGCCCACTCCAAAGGCACGCTGTCAAGAGCTCCGGTGTAGACAGTGACGGCGTGAGGTACTTGTTGTTGTGTAGCGTTATATTGGGGAAGACGGAGGTGGTACCACGTGGCTCCAATCAACGCCGTTCGAGTTCTGAAGAGTACGATTCTGGGGTGGACGATCTTTCGGCTCCCAAGGAGTATGTTATTTGGTCTAACCGGATCAACACTCATGTTTTGCCCGAATATGTTTTGAGTTTCACGCTTCCTTCCTTGAAAGGGAATGTGAATATTGGGGGACCTTTGAGGCCCTCTTCGCCATGGATGCCGTTCCCAGCTTTGATTTCGGTGCTTTCGAAGATTTTGCATGCGGATCAAGTTGCCATCATTGTCAAGATACGCAAAGATTATACAGAATTGAAGATTTCTCGGCATGAGATGATACAGAGAGTGAGAAATATAGCAAGTGACAAATTGCTAGTTTCCATCATCAGATCTTTCAGAGCCAAGAAAACACCTGCAAGCTTTAAAGCAAACAAGGGTAAACAAGGGCAAGGGGAAAGAAGAGCAAGGGGACAGCCAGTAGCATGA 987 0.5117 MDRPIHHSSDTPTYVSDDESVVSDCESGVSGDEGTFSGAFVPAPQDGLRVRTRFVRSLVLNGLMPEVLSIAKNAHSSVMARARAQCFQIFARAVAELHEGRANVRFAWYGASGKEEIADIAQHGFGHAHCNGLRLSPLDCPLQRHAVKSSGVDSDGVRYLLLCSVILGKTEVVPRGSNQRRSSSEEYDSGVDDLSAPKEYVIWSNRINTHVLPEYVLSFTLPSLKGNVNIGGPLRPSSPWMPFPALISVLSKILHADQVAIIVKIRKDYTELKISRHEMIQRVRNIASDKLLVSIIRSFRAKKTPASFKANKGKQGQGERRARGQPVA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01196 328 Gene3D - 45 220 - -
Vian1g01196 328 ProSiteProfiles PARP catalytic domain profile. 1 240 IPR012317 GO:0003950
Vian1g01196 328 MobiDBLite consensus disorder prediction 1 31 - -
Vian1g01196 328 SUPERFAMILY ADP-ribosylation 73 220 - -
Vian1g01196 328 MobiDBLite consensus disorder prediction 304 328 - -
Vian1g01196 328 Pfam RCD1-SRO-TAF4 (RST) plant domain 235 300 IPR022003 -
Vian1g01196 328 ProSiteProfiles RST domain profile. 234 305 IPR022003 -
Vian1g01196 328 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 53 301 IPR044964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01196 Vian-Chr1 12879403 12881737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01196 - - gmx:100784311 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01196 1 12879403 12881737 Vian4g00851 4 11511978 11516864 PCT