Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00848 ATGGCTTCTCAATCCTCGTCTCTTCCCATTTCCACAGTTCAAACCGCTGGTGGTGAAATTGTTCAACCGGAAAATGTTGATCGGCAGAATAGTGTAGAGGAGCTTGGTAAACAAAGTTCAGACACATCTGTGTTTGTTAACTCAGAACCAATGCGCGAAGAACAAATTCAGAATGCTGTGAAATTTCTGTCGCACCCGAAAGTTAGAGGTTCTCCTGTCATCCATAGGCGGTCATTTCTGGAGAAGAAGGGCCTTACGAAGGAGGAGATTGATGAAGCCTTTAGGCGTGTGCCTGATTCAGCTCCCACTGTGCAGACAGCTGGTGTAATTCAAGATGAACAATTAAAACCATCTTCAAACATTCATCAGCAAAGCCAACCACAGGCTTTGCAGACGACTGTACCAGCTTCTACTGGTGTTATTACTTCACTGGGAACTTTGTCACGCCGCCATTTTCACTGGTCTCATGCCCTTATTGCCGTTGGATTACTAGCTACTTCTGGTGCTGGTACAGTTATACTAATTAAGAATTCTGTTCTTCCTTGGTTAAAATCCTGGTTGCGCAATGTTGTGCTAGAAGGGGAAAATGTCCAATTAAAGAGAACAGGCTCAAAACCAACTTTGGCAGAAGAAGCTGCACAGGCGGCAAAAGCAGCTGCAGTTGCAGCCGCTGATATGGCAAAAGCTAGCCAAGAATTATTGACTTCTATAATTGAAGAGAAAAGATATTTTGTACAAGTTGTGAGCCTTTTGGATAGGCAAGTGGAGGAAATGAAGTTGATGATCAATGCAGTAAAAAGATTGGAAGCTTCTGGTGGACTCTCTGTCTCCAAGCAAGAAGATCGCCAAGTCACTCAAACAAGTTCAAAGCAGTCTGTCCTTTATGGGAAGTCAGACTACGAGTCCCAATCAGTGAGATCTTCATCCTCTCCTAAATCTCTTCAACCATCTACTGCTCCGCATCCAAAATCATATTTGGAGATAATGGCCATGATCCAAAGAGGAGAGAAGCCTTCTAATATTAGAGAAATTGATGATTCAGCCCCCAACCCTTATCAGCAACCATCAAACCCTCGCTTAGCCCCTAAAGCGAAGCCTTGGGAGGTTAGTCAGGTGCAAAACACCTCATCCCAAGTCGTCCAGTATCAAGCAAATGGCAAGGTCCAAGATAGTGGTGGTGACAACTCAGTACCCTGGTGGCAAACGAAGGACATCAGAATCAAAGAGATTGATAACGAAGTTGAATATAATGTAGCATCTGCTGCATCCAGTCAGCAGCCAGTCCAACGATTGTGGGTTCCTCCTCAACCTCCCCCTATAGCAATGCGGGAGGCTGCCGAAGCAATCAGGCGCCCAAAATCAGTCGTCCAAAAGGAAGCAATTCAGGATGATCAGTCAGCACCAAATTCTTCAGAGTTCTCTAATGGATCCAATTCCGAAGATGCTATAGAAGGCAACGGCATCGACTCACTTATCAGCTCTGGTGAGATCCAAAATCATGAATTCAATTACGAAGAAAAATAA 1524 0.4449 MASQSSSLPISTVQTAGGEIVQPENVDRQNSVEELGKQSSDTSVFVNSEPMREEQIQNAVKFLSHPKVRGSPVIHRRSFLEKKGLTKEEIDEAFRRVPDSAPTVQTAGVIQDEQLKPSSNIHQQSQPQALQTTVPASTGVITSLGTLSRRHFHWSHALIAVGLLATSGAGTVILIKNSVLPWLKSWLRNVVLEGENVQLKRTGSKPTLAEEAAQAAKAAAVAAADMAKASQELLTSIIEEKRYFVQVVSLLDRQVEEMKLMINAVKRLEASGGLSVSKQEDRQVTQTSSKQSVLYGKSDYESQSVRSSSSPKSLQPSTAPHPKSYLEIMAMIQRGEKPSNIREIDDSAPNPYQQPSNPRLAPKAKPWEVSQVQNTSSQVVQYQANGKVQDSGGDNSVPWWQTKDIRIKEIDNEVEYNVASAASSQQPVQRLWVPPQPPPIAMREAAEAIRRPKSVVQKEAIQDDQSAPNSSEFSNGSNSEDAIEGNGIDSLISSGEIQNHEFNYEEK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00848 507 Gene3D - 44 107 IPR036388 -
Vian4g00848 507 Pfam Family of unknown function (DUF5572) 320 369 - -
Vian4g00848 507 MobiDBLite consensus disorder prediction 459 484 - -
Vian4g00848 507 MobiDBLite consensus disorder prediction 1 43 - -
Vian4g00848 507 MobiDBLite consensus disorder prediction 341 362 - -
Vian4g00848 507 Coils Coil 251 271 - -
Vian4g00848 507 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 1 482 IPR025655 GO:0005515|GO:0005778|GO:0016560
Vian4g00848 507 MobiDBLite consensus disorder prediction 273 321 - -
Vian4g00848 507 FunFam Peroxisomal membrane protein PEX14 44 106 - -
Vian4g00848 507 Pfam Pex14 N-terminal domain 52 96 IPR006785 -
Vian4g00848 507 MobiDBLite consensus disorder prediction 276 320 - -
Vian4g00848 507 MobiDBLite consensus disorder prediction 450 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00848 Vian-Chr4 11459164 11467109 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00848 K13343 - gmx:100807229 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01188 1 12760147 12769588 Vian4g00848 4 11459164 11467109 PCT