Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01188 ATGGCCACCCAATCGCGGCCGCCTTCCACTTCCACCGCCAGGGAAGAAAACAAAGGTTCTGAGATTGTGCAACTAGCAAATATGGATCAGAAAAACACCATAGAAGCAGAGCCTGCTAAACCTAGTTCAACTCCATCAGTATTTGTAAACTCACAACCGATGAGGGAAGAACAAGTTCAGAATGCTGTGAAATTTCTGTCTCACCCAAAAGTTAGAGGTTCACCTGTCATCTATAGGCGATCATTTTTAGAGAAGAAGGGCCTTACAAAGGAGGAGATTGATGAAGCCTTTCGGCGAGTGCCAGATTCAGCTCCAACTGTGCAAACAGGCGGTGTAAATCAAGATGGGCAATTGAAATCATCATCAAACAATGAGCAACAAACTCAGCAAAAAACCTTGCAGCTGGTTTCGCCTTCTTCTACTGGTGTTAAAACTTCATCAGGAACATTACCACGCTCAAGATTTCACTGGTCCCATGCCCTAATTGCTGTTGGATTACTGGCTGCTTCAGGTGCTGGAACAGCTATAATAATTAAGAAATCTTTTCTCCCTCGGTTAAAATCTTGGATACGTAAGGTTGTCCTTGACAATGATGATGAACAATTGAAGAAAACTGATGACAAACCAACATTGCTGGAAGAAGCTGCACAAGCTGCAAAATCAGCAGCAGCTGCATCTGCAGAAGTGGCAAAAGCGAGCCAAGAAATTATGGCTTCAAAAGGTGAAGAGAGGAGATACTTTGTGGAAGTTGTGAGCCTTTTAGACAAGCAAGTACAAGAAATGAAGTCAATGACAAATGCCATAAGAAGATTGGAAGGGCAAGAAGATCTTCAAATCAGTCAAACAAGTTCAAAGCAACTGATTGTGAATGGCAAAGCGGATTATGACATGCGTTCAGTGAGATCTTCATCTCCACCTGCATCTGTTCAATCATCAAGTGGTCTTCATCCAAAGTCATATATGGAGATAATGGCCATGGTCCAAAGAGGAGAGAAGCCTTCTAATATTAGACCTTGGGAGGTTGGTCAGGTGCAAAACACGTCTACTCAGATTCTTCAATCTCAAGTAAATGGTGAAGACCTGAATACCAAGACCCAGGATACGTCTCTAGTAAATGGGGATGACCCATTGCCCTGGTGGCAGAGGAAAAATGTCAGAATCACAGAGATTGAGAATGAAAATGAGTCTAATGGAGTACCTTATGCTGCTGCATCCAGTCAGCAGCCAGTTCAACGTGTATGGGTTCCTCCTCAACCTCCACCCATAGCCATGCCTGGGGCTGCAGAAGCTATCAGACGCCCAAAGCAGGTGGCCCAAAAGGAACAGAAGTCAGATAATCAGTCAGTGGCTCAATCTTCTGACAGCTCTGTTGACGTTCAAGGGGTCTCAAAACCATTTGAATCTGAAGGTGCAGTAGAGGGCAGCAGTGTCAGCTCAGTTCCCAGCTCCAGTGAGATCCAAGAGGAGCATGAAGTCAAATATGATGAGAAATGA 1494 0.4431 MATQSRPPSTSTAREENKGSEIVQLANMDQKNTIEAEPAKPSSTPSVFVNSQPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDSAPTVQTGGVNQDGQLKSSSNNEQQTQQKTLQLVSPSSTGVKTSSGTLPRSRFHWSHALIAVGLLAASGAGTAIIIKKSFLPRLKSWIRKVVLDNDDEQLKKTDDKPTLLEEAAQAAKSAAAASAEVAKASQEIMASKGEERRYFVEVVSLLDKQVQEMKSMTNAIRRLEGQEDLQISQTSSKQLIVNGKADYDMRSVRSSSPPASVQSSSGLHPKSYMEIMAMVQRGEKPSNIRPWEVGQVQNTSTQILQSQVNGEDLNTKTQDTSLVNGDDPLPWWQRKNVRITEIENENESNGVPYAAASSQQPVQRVWVPPQPPPIAMPGAAEAIRRPKQVAQKEQKSDNQSVAQSSDSSVDVQGVSKPFESEGAVEGSSVSSVPSSSEIQEEHEVKYDEK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01188 497 Coils Coil 254 274 - -
Vian1g01188 497 MobiDBLite consensus disorder prediction 1 53 - -
Vian1g01188 497 MobiDBLite consensus disorder prediction 441 462 - -
Vian1g01188 497 MobiDBLite consensus disorder prediction 106 149 - -
Vian1g01188 497 Pfam Pex14 N-terminal domain 55 99 IPR006785 -
Vian1g01188 497 MobiDBLite consensus disorder prediction 99 149 - -
Vian1g01188 497 FunFam Peroxisomal membrane protein PEX14 47 109 - -
Vian1g01188 497 MobiDBLite consensus disorder prediction 398 497 - -
Vian1g01188 497 MobiDBLite consensus disorder prediction 398 412 - -
Vian1g01188 497 Coils Coil 215 235 - -
Vian1g01188 497 Gene3D - 47 109 IPR036388 -
Vian1g01188 497 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 1 491 IPR025655 GO:0005515|GO:0005778|GO:0016560
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01188 Vian-Chr1 12760147 12769588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01188 K13343 - gmx:100784152 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01188 1 12760147 12769588 Vian1g01188 1 12760147 12769588 ECH
Vian1g01188 1 12760147 12769588 Vian4g00848 4 11459164 11467109 PCT