Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00814 ATGGAATACCCTCCATCATATAGCTTCGCTTCCTCTTCTCACTCCTCCCACCATCAACCAGGCTCAACACCCCTCTCTTCACAACGCAGCCTTATCTCAGTTCCATCCCTCAACCCTTCCACCACCACCGCCACCACCTTCCACCAGTGCCTCACCACCCTCAAGGGTCATACCTCCCACATCTCCTCCCTAACCCTCTCCGGTAAATTCCTTTACACAGGCTCCTCCGACAGGGAAATCAGGTCCTGGAACCGCACCCCTCTCAACTCCCACCCTCAGAACACCATTCTCGCCGGGAACGGCGCCGTTAAGTCCTTGATTATTCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCAACACCAACAACAACGGTAAACACGAACACGACGTTGACGACCATAAAAAATACACGCACGTGGCCACACTCCCGACCCTGGGAGACCGCGCCTCGAAGGTTCTGATTCCGAAGAACCATGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACCGTGTCCGCGCTGGCCCTGTCGAAAGACGGGACCTTGCTGTACTCCGTTTCGTGGGACAGGAGCATAAAAATCTGGAGAACGAAGGACTTCGCGTGCCTGGAGTCCGTGACGAGCGCACACGACGACGCCATAAACGCCGTGGCAGTATCTTACGATGGACGCGTGTACACGGGATCAGCAGACAAGAGAATCAAGGTGTGGAGGAAGGAGGAAGGGGAAGGAAAACACAGGCTGGTGGAGAGTTTGGAGAAGCACAAGTCTGGGGTGAATGCGCTGGCTCTGAGCAGTGACGAGAAGCATTTGTATTCGGGTGCATGCGATAGATCGGTGTTGGTTTGGGAGAAAAAGGGAGAGAGAATGGGGTTGGTGGGTGCGTTGAGGGGCCACACAAAATCCATTTTGTGTTTGGCTGTGGTGGGCGATTTGGTGTGCAGTGGGTCTGCTGATAAAACGATAAGAATTTGGCGAGGTTTTCATGCACAATACTCTTGTTTAGCTGTTTTGGAAGGACACGGTGGTTCGATCAAGTGCTTAACTGCCGTGCTTGACCACTGTAATCCGTCGCACTCTCAGACATCTTTTCTAGTCTACAGTGGCGGTTTGGACTGCGACATTAAGGTTTGGCAGATTTTAGTTCCTTCTATCTAA 1203 0.5254 MEYPPSYSFASSSHSSHHQPGSTPLSSQRSLISVPSLNPSTTTATTFHQCLTTLKGHTSHISSLTLSGKFLYTGSSDREIRSWNRTPLNSHPQNTILAGNGAVKSLIIQSNKLFSAHQDHKIRVWKISNTNNNGKHEHDVDDHKKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRSIKIWRTKDFACLESVTSAHDDAINAVAVSYDGRVYTGSADKRIKVWRKEEGEGKHRLVESLEKHKSGVNALALSSDEKHLYSGACDRSVLVWEKKGERMGLVGALRGHTKSILCLAVVGDLVCSGSADKTIRIWRGFHAQYSCLAVLEGHGGSIKCLTAVLDHCNPSHSQTSFLVYSGGLDCDIKVWQILVPSI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00814 400 MobiDBLite consensus disorder prediction 1 37 - -
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 84 - -
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 340 - -
Vian4g00814 400 Gene3D - 37 155 IPR015943 GO:0005515
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 299 IPR001680 GO:0005515
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 252 - -
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 340 IPR001680 GO:0005515
Vian4g00814 400 Pfam WD domain, G-beta repeat 265 298 IPR001680 GO:0005515
Vian4g00814 400 Pfam WD domain, G-beta repeat 222 252 IPR001680 GO:0005515
Vian4g00814 400 Pfam WD domain, G-beta repeat 49 84 IPR001680 GO:0005515
Vian4g00814 400 Pfam WD domain, G-beta repeat 308 340 IPR001680 GO:0005515
Vian4g00814 400 Pfam WD domain, G-beta repeat 180 210 IPR001680 GO:0005515
Vian4g00814 400 Pfam WD domain, G-beta repeat 348 393 IPR001680 GO:0005515
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Vian4g00814 400 SUPERFAMILY WD40 repeat-like 48 395 IPR036322 GO:0005515
Vian4g00814 400 Gene3D - 168 397 IPR015943 GO:0005515
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 84 IPR001680 GO:0005515
Vian4g00814 400 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 395 IPR045182 -
Vian4g00814 400 CDD WD40 50 394 - -
Vian4g00814 400 SMART WD40_4 214 253 IPR001680 GO:0005515
Vian4g00814 400 SMART WD40_4 304 341 IPR001680 GO:0005515
Vian4g00814 400 SMART WD40_4 346 394 IPR001680 GO:0005515
Vian4g00814 400 SMART WD40_4 47 84 IPR001680 GO:0005515
Vian4g00814 400 SMART WD40_4 172 211 IPR001680 GO:0005515
Vian4g00814 400 SMART WD40_4 89 126 IPR001680 GO:0005515
Vian4g00814 400 SMART WD40_4 260 299 IPR001680 GO:0005515
Vian4g00814 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 262 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00814 Vian-Chr4 10721342 10722544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00814 176 368 Acyl Lipid Metabolism Gene Families AT3G18860 25.854 1.79e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00814 - - gmx:100815608 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01153 1 12395046 12396215 Vian4g00814 4 10721342 10722544 ECH
Vian4g00814 4 10721342 10722544 Vian4g00814 4 10721342 10722544 ECH
Vian1g01153 1 12395046 12396215 Vian4g00814 4 10721342 10722544 PCT