Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01153 ATGGAACGCACGGCATCCTTCAACGACACCAATAATAGTCTCTCTTCGCAAGCAAGTCTCGCTTCGGTTCCTTCCCTCAACTCACACTCACACTTCTTCAACGCTTCCACCACCTCTCACACGTGCCTCGCCACTCTCAAACCCCACACCTCCTCCTACGCCTCCTCCCTCACCCTCGCCGGCAAGTTCCTCTACGCAGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACCATTTTCCTCTCCGAAAACCTACAAAACACCAACCTCCTAACCGCGGGAACGGGTGCCGTGAAATCCATAGTGGTCCACTCCAACAAGCTCTTCAGCGCGCACCAAGACCACAAAATCCGCGTCTGGAGAATCACCACCCACGACCACGACCAACAGAAGTTCACACATGTGGCCACTCTCCCCACGCTCCGGGACCGCGTCACCAAAATCTTGATCCCGAAGAATCACGTTCAGATTCGGCGGCACAAGAAGTGCACCTGGGTTCACCACGTGGACACCGTGTCCTCCCTGGCCTTGTCCCACGACGGAAAGTTGTTGTACTCCGTTTCTTGGGACCGGACGCTGAAGATTTGGCGGACGAAAGACTTCGCGTGCTTGGAGTCGGTGCGCAACGCGCACGAGGACGCCATAAACGCTGTGATAGTTTCTGAGGAGGGACAGGTGTACACTGGATCCGCCGACAAGAAAATAAGGGTTTGGAGAAAAAGGGAAGGGGAGAAGAAACACTGTGTGGTGGAGACGTTGGAGAAACACAGGTCAGGAATTAACGCTTTGGCTCTTAGCAGTGATGGATGCGTGTTGTACTCTGGTGCATGTGATAGGTCCATACTGGTTTGGGAGAAGGGAGAGAATGGAAAGTCGGTGGTGGTTGGTGCTCTGAGGGGGCACACCAAGTCCATTCTCTGCTTGTGTGTGGTTTGGGATTTGGTGTGTAGCGGTTCTGAGGATAAAACGGTGCGTATTTGGAGAGGGATTGAGAAGGAGTATTCCTGCTTAGCTGTTTTGGAAGGACATATGAGTCCTATTAAGACCCTAACTGCAACCCTTTATCACACCGATCAGCCTTCCCAAGTATCTCTTCTTCTCTATAGTGGCAGTTTGAACTGTGATATCAAAGTTTGGCAGCTTTTTCTTCCTCTTCTTTCCACCTAA 1170 0.5214 MERTASFNDTNNSLSSQASLASVPSLNSHSHFFNASTTSHTCLATLKPHTSSYASSLTLAGKFLYAGSSDREIRSWNHTIFLSENLQNTNLLTAGTGAVKSIVVHSNKLFSAHQDHKIRVWRITTHDHDQQKFTHVATLPTLRDRVTKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSHDGKLLYSVSWDRTLKIWRTKDFACLESVRNAHEDAINAVIVSEEGQVYTGSADKKIRVWRKREGEKKHCVVETLEKHRSGINALALSSDGCVLYSGACDRSILVWEKGENGKSVVVGALRGHTKSILCLCVVWDLVCSGSEDKTVRIWRGIEKEYSCLAVLEGHMSPIKTLTATLYHTDQPSQVSLLLYSGSLNCDIKVWQLFLPLLST 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01153 389 Pfam WD domain, G-beta repeat 253 285 IPR001680 GO:0005515
Vian1g01153 389 Pfam WD domain, G-beta repeat 167 197 IPR001680 GO:0005515
Vian1g01153 389 Pfam WD domain, G-beta repeat 336 380 IPR001680 GO:0005515
Vian1g01153 389 Pfam WD domain, G-beta repeat 297 328 IPR001680 GO:0005515
Vian1g01153 389 Pfam WD domain, G-beta repeat 205 239 IPR001680 GO:0005515
Vian1g01153 389 Gene3D - 14 158 IPR015943 GO:0005515
Vian1g01153 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Vian1g01153 389 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 382 IPR045182 -
Vian1g01153 389 FunFam BnaA09g28200D protein 156 244 - -
Vian1g01153 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 328 IPR001680 GO:0005515
Vian1g01153 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 286 IPR001680 GO:0005515
Vian1g01153 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 286 - -
Vian1g01153 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 197 - -
Vian1g01153 389 CDD WD40 42 381 - -
Vian1g01153 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 249 IPR001680 GO:0005515
Vian1g01153 389 Gene3D - 159 384 IPR015943 GO:0005515
Vian1g01153 389 SMART WD40_4 247 286 IPR001680 GO:0005515
Vian1g01153 389 SMART WD40_4 159 198 IPR001680 GO:0005515
Vian1g01153 389 SMART WD40_4 85 122 IPR001680 GO:0005515
Vian1g01153 389 SMART WD40_4 292 329 IPR001680 GO:0005515
Vian1g01153 389 SMART WD40_4 334 381 IPR001680 GO:0005515
Vian1g01153 389 SMART WD40_4 201 240 IPR001680 GO:0005515
Vian1g01153 389 SMART WD40_4 39 77 IPR001680 GO:0005515
Vian1g01153 389 SUPERFAMILY WD40 repeat-like 38 382 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01153 Vian-Chr1 12395046 12396215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01153 163 382 Acyl Lipid Metabolism Gene Families AT3G18860 22.511 4.16e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01153 - - gmx:100801906 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01153 1 12395046 12396215 Vian4g00814 4 10721342 10722544 ECH
Vian1g01153 1 12395046 12396215 Vian1g01153 1 12395046 12396215 ECH
Vian1g01153 1 12395046 12396215 Vian4g00814 4 10721342 10722544 PCT