Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00801 ATGGCTCACGCCACAAAGCAAACGCAGAACACAAAGCAGAGGGTCCTCACGTGCTTGACGAAGCTCTCGGACCGCGATACACAGGCTGCAGGAGCCACCGAACTCGAGTCCATCGCTCGTAGCCTGGACCCGCACTCTGTTCCCGTCTTCCTCTCCTGCATTCACTCCACCGACGCCTCCGACAAAACCCCTGTCCGCAAACAATGTGTGCACATCGTGGCAACGCTCTCCCACGCGCACGGCGACGCGCTCTCGCCTTTCCTCTCCAGAATCCTAACCAACCTCGTGCGCCGCCTCCGCGATCCCGACTCCTCCGTGCGGGCCGCCTGCGTCGACTCCGTCGGCGCGCTGTCGGCGCGTGTCACTCGGCAGCCTTTCTCCTCCTTCCTGAAGCCGCTGGCGGAGGCGCTCTTCACAGAGCAGGACCCCAACTCGCAGGCAGCCGCCGCGCTCTGTCTCGCCTCCGCCGTCGACGGGGCTCCGGATCCGGACCCCGCCAGGCTTGCCAGGCTGCTCCCGAGGTTTGAGAAGCTCCTCAAAAGTAAGGTGTTCAGGGCCAAACCCGCGCTGCTGGCGCTCGTCGGAAGTGTTGTGGAGGCGGGCGGGGCGTCGAGTCGCAGCTCCTTGAGGAATTTGGTTCCCTGCCTTGTGGAGGCGCTTGGCAGCGTGGACTGGGCCACGAGGAAGGGCGCGGCGGAGGCGTTGAGGAGACTCGCCGTCGCAGAGAGGGACCTCTTGTCGGAGTTCAAGGGTGGATGTTTCAGAGCGCTCGAGGATCGGCGATTTGATAAGGTAAAGTTGGTTCGGGAAGTTGTGAATCAGATGTTGGAGGCGTGGAAGCAGATTCCTGATGTCTCGGATGAGTTCTCTCCACCTCCTCATTCTCAGTCTTCTGCTAAAGAGAATGCAAGTGATGGGCGCTATCCTCCTGTCTCTCAAAATTCATGTAGTCCGGGTTCTGTTATGAGTAAGTTGAGGAAGAAATCAAGCCCAATTAGCAAATCAACTCCACCGGATAGATCTCTTGCCAGAAATGCTAAAAGGTTGAGTGCCTTAAGTGGTGACCGGATGAATTCGGGTGTTTTGCAGAAACTGAACCATAACCATTGGGATGTTAGAATTGCTGTGTCAAATCTTCCTGATCATGGTGAATGTCAGCCGAGGGATGAAAATGTATTGGAAAGCAGCAAAAAGGATAAAAGCAGATTTTTCAAGTCAGAAACAAAACGGGCTCTATTTGAGAAAAATTCTGATGACAAGATGCATAAATTTGGTGGGTCGAAAGCTGGATCTCGTGTGGTTCCTTGTTCAGAAGAGAATCAAGACTCAGATCCTGCCTGTAATGTAGCGAAGGATCTTCCTAGGATTGATAAAGAGAGTGAGGAATTATCTTCTATTCGTGCCCAGTTAGTTCAAATTGAGAAGCAGCAGTCAAATCTGTTTGATCTTCTACAGAAATTCATTGGGAGCTCTGAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTCGAGTTGGCATTGGATGATATATCTTATGATTTGGCTGTAACTAGTGGAAGGATAACTAAATCTGATGCTCCCAAGAATACATGCTGTCTGCTACCTGGTGCCGAATTTTTAAGCTCCAAATTCTGGAAGAAAACACAGATCAGGTATTCATCCAACCGGTTCTCTAGAACTGGTAGCACTCCATTACTAGCTTCCAGTCATTACAGAGATAATAGGAACACAGAATCTAGTACGGCAAGCCACAGGTTTAGGGTCCGTGGTGATGGAAGCTTCATCACAAATCCCCTGGCAGAGATTAAAATTAATTCAAGGGAAATTTCGGGCTCTGCAAGATCAGAGCTAGCTTGA 1863 0.5185 MAHATKQTQNTKQRVLTCLTKLSDRDTQAAGATELESIARSLDPHSVPVFLSCIHSTDASDKTPVRKQCVHIVATLSHAHGDALSPFLSRILTNLVRRLRDPDSSVRAACVDSVGALSARVTRQPFSSFLKPLAEALFTEQDPNSQAAAALCLASAVDGAPDPDPARLARLLPRFEKLLKSKVFRAKPALLALVGSVVEAGGASSRSSLRNLVPCLVEALGSVDWATRKGAAEALRRLAVAERDLLSEFKGGCFRALEDRRFDKVKLVREVVNQMLEAWKQIPDVSDEFSPPPHSQSSAKENASDGRYPPVSQNSCSPGSVMSKLRKKSSPISKSTPPDRSLARNAKRLSALSGDRMNSGVLQKLNHNHWDVRIAVSNLPDHGECQPRDENVLESSKKDKSRFFKSETKRALFEKNSDDKMHKFGGSKAGSRVVPCSEENQDSDPACNVAKDLPRIDKESEELSSIRAQLVQIEKQQSNLFDLLQKFIGSSENGMRSLETRVHGLELALDDISYDLAVTSGRITKSDAPKNTCCLLPGAEFLSSKFWKKTQIRYSSNRFSRTGSTPLLASSHYRDNRNTESSTASHRFRVRGDGSFITNPLAEIKINSREISGSARSELA 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00801 620 ProSiteProfiles HEAT repeat profile. 91 129 IPR021133 -
Vian4g00801 620 SUPERFAMILY ARM repeat 11 376 IPR016024 -
Vian4g00801 620 FunFam TORTIFOLIA1-like protein 3 isoform A 2 359 - -
Vian4g00801 620 Pfam HEAT repeat 91 118 IPR000357 GO:0005515
Vian4g00801 620 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 5 581 IPR033337 GO:0005874|GO:0008017
Vian4g00801 620 MobiDBLite consensus disorder prediction 423 448 - -
Vian4g00801 620 Coils Coil 456 476 - -
Vian4g00801 620 Gene3D - 4 379 IPR011989 -
Vian4g00801 620 MobiDBLite consensus disorder prediction 284 345 - -
Vian4g00801 620 MobiDBLite consensus disorder prediction 290 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00801 Vian-Chr4 10525192 10527713 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00801 - - gmx:100778310 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00801 4 10525192 10527713 Vian4g00801 4 10525192 10527713 ECH
Vian1g00722 1 7390042 7392626 Vian4g00801 4 10525192 10527713 PCT