Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00643 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGAGATTCATGCCAAACTTGTGGGTACCCTAAATTTGGAGGTCCTGATCCAACAACTTACAGATACAACTGGACTGAAACCTTGGCAGGGGACTGGTATTGCACTTCTATGAACTGTGGAGCTCACAACTATGCCAGTAGATCAAGCTGCTACAGATGTGGTGCATTGAAAGATGGTTATTCTTGCAGATTTGGGGGAAACATTGACCCCTGTGGAGGATATGCTTCTGATTGTCCTCCTGGGTGGAAAACTGGTGACTGGATTTGCAGTAGCTTTAGGGTTTCACCGGCGACTGGCGAAAAAATGGTGTCTCCGAAGCAGCTCCTAGGCACCATCGAATCAGCGCTTCTTGGCGCTTCGTCTCCGACGGCGGCGCAACGCGTAGAACTCTTGCACGCTCTTCGCACTTCCGTCATCTCCTTCCAGTCCCTTCTCTCCTATCCACCCCCAAAACCCTCTGATCGAAGCCAACTTCAGTCAAAGTCCGTCAGGCTGCCTGATTCTCCTCCTATTTCACTTGACGACCAGGATGTGCACATTGCGCTCAAGTTGAGTGATGATCTCCATCTCAATGAAGTAGATTGTGTTCGTTTGCTTGTATCAGCTAATCAAGAGGCTGTGGTGCTAGATCAGGGACTGCAAGATGATATATTGGTAGACATTCAGAAGTATCTAGAAGATCTTATCAGTTCAGGACTTAGGCAGCGGTTAATTTCTCTTATCAAGGAACTCAATAGAGAAGAACCTTCTGGTTTGGGTGGTCTTCAGTGTGAGCGCTTTATTATTGATTCAAGAGGTTCTCTTGTGGAGAGGCAGGCAGTGGTCTCTAGAGAAAGACTTATTCTTGGGCATTGTCTTGTCCTTTCGATTCTAGTTGTTCGGACAAGTCCAAAGGATATTAAAGATATTTTTTCTGTTTTGAAAGATAATGCTTCTGAAGTTAGTGAGAGCAATACCATTGTCAAACATCAGATTACCTTTTGTCTTCTCTTTGCCCTTGTGATTGCGTTTGTTTCAGATGGTTTGAGTACAGTGCCTGATAAAGCATCTGTCCTTTCTTCTAATACTTCCTTCAAACACGAATTTCATGAGCTTGTAATGGCTGCTGGAAATGATCCAATTGTTGAGGGATTTGTTGGTGGCGTAAGGCTTGCTTGGGCGGTATATTTAATGTTAATACAAGATGGTGCTGTAACAAGAGAGACTATTTCAAGTGGGTCATCAAACGAACTGGGTTATCTTAGTCAATGCTTGGAAGTCATTTTCTCAAATAATGTTTTTCAGTTTTTACTTGATAAAGTTCTTCGTACTGCTGCTTACCAGATAAAAGAAACGAAGGAGCGATCTATGAGTGTGCTTAGTACATACCGAGTTGTTGGATCTCATGATTTTGCACAAGACACTAATTCAAGTTCTCTTCATGGCCCTATGCCATTTAATTCAATCTTGGACTTTGTGAGCGATATTTATCAGAAAGAACCAGAACTCTTGTCTGGCAATGATGTATTGTGGACATTTGCAAATTTTGCTGGAGAGGACCATACAAATTTCCACACGCTTGTGGCATTCTTGAATATGCTGAGCACCTTGGCTTGCAGTCAAGAAGGTGCTTCAAAGGTTTATGAGTTGCTGCAAGGTAAAGCATTTCGCTCAATTGGATGGAGCACTTTATTTGAATGCTTAACAATTTATGACGAGAAATTCAAACAATCTCTTCAAACTGCTGGAGCTATGTGGCCTGAAATTCAGGAGGGGGATGCTAAAGCTCTTGTGGCATACTTAAATGTTCTGAAGAAGGTTGTAGAAAACGGGAATCCAACAGAAAGGAGGACCTGGTTTCCTGATATTGAACCACTATTTAAGCTTCTTAGTTACGAAAATGTGCCTCCTTATCTTAAGGGTGCTCTGAGGAATGCAATAACCGCTTTTATTCAGGTTTCTCCAATACTGAAAGACAGCATCTGGACCTACCTTGAGCAATATGATCTGCCAGTAGTTGTTGGGCCTGATATCCAGAATAGTCCACAATCTATGGGTACTCAGAATCAAGAAACACAAATCGGAGCCAAATGGGATGTTACAATTCTTCAAAATGTGCTCGTGAGGTCTGTTAGAGCTAGGCAGTTAGTTTCCCTAAATGAGCCAGCCGTCAATTTCACTGAGTGGATTCCCTATTCATGGGTTTATGACATGCGATTTGAATTGAATGAAATTGAAGCAAGGAGAGAACAATATCCTTCAACAATATCTTTCCTTAATTTGATAAATGCTCTTATTGCAGAAGAAAGTGATTTGTCTGACAGAGGGCGAAGATTTATTGGAATCTTTAGGTTCATCTATGATCATGTTTTTGGGCCATTTCCTCAAAGAGCCTATGCGGATCCTTGCGAAAAGTGGCAGTTGGTTGGTGCCTGCCTTAAACATTTTCACATGGTTTTGAGCATGTATGGCATCAAAGATGAGGACTATGAGGGTGTAGTTGATGAGTCGCGACTTACAGCAACTAAAGAATCATCACCACTTCAGACGCAGCTCCCAGTCCTAGAGTTGCTCAAAGATTTCATGAGTGGAAAAACTGCCTTTCGGAACATAATGAGTATTCTTCTTCCAGGGGTGAATTCTATTATTGCTGAACGCAGCAGTCAATTATATGGGAAGCTTTTAGAGAATGCAGTGCAGCTTTCCCTTGAAATTATAATCCTTGTCTTTGATAAGGATTTACTTCTTTCTGATTATTGGCTTCCTCTATACCAGCTTCTAATTGACAATATCAGCCGGCCAGCTCCAAATATCACTCATTTGCTACTTAAATTTGATCTAGATACTCCAATTGAACGAACAGTTTTACAGCCTAAATTTTATTACAGTTGCTTGAAGGTTATTCTTGATATTCTGGAGGAGCTTTTGAAGCCTGATGTTAATGCATTACTTCACGAGTTTTGTTTTCAGAGAGCATGGCTCTTGAAACTCTTAGCTGTTGAACTACACGCTGGTGATGTTAGTAGCTCCAATCATAGAGAAGCATGTCAGACAATCCTCTCTTATCTTTTTTCACATGGTGTCAACGACGTTGGTGGGGGCCAGACCATGTATCCATTTTTGCGTCATGATACTTCTCAAAATGCTGCTCTAGGAACTGTCAGCAAGAGTAAGGTATTTGAATTGCTTGAAATCATCCAGTTTAGATGTCCAGATTCCACTTCTCAGCTCTCAGATATTGTGGCTGGAATGAAATATGACTTGTCGGCGGAAGACATACTTGGAAATTCTGGAAAGGATGGTGTGTACTATTATTCTGAGAGAGGTGATCGGCTAATTGACCTGGCCGCTTTCCACGACAAACTTTGGCAGAAATACAATTCAGCTTACTCCCAGGCAAGCAACATTGGAAATGAAGTTGAGCTAAATAATGTTCGTGAGACAATTCAACAGTTGCTTAGATGGGGTTGGAAATACAATAAAAATCTTGAGGAACAAGCTGCACAACTTCATATGTTGACAGCCTGGTCTCAAATTGTTGAGGATTGTTCATTAAAGATGGCATTCATACTGTCCCAGGTAGCATTGACATGCATGGCTAAGCTGCGAGATGAAAGATTTTTGTTCCCTGGTAGTCTTAGTTCTGATAATATCACTTGCCTTGATCTCATTGTGGTGAAGCAATTATCCAACGGTGCTTGTCTTACTATATTGTTTAAGCTTATTATGGCAATTCTTAGAAATGAATCTTCTGAAGCTCTTAGGAGACGCTATTTCCAGTATTGTCAAAATGTGGTTGATCCTGATGTTCCATCAACAGTTCTTCAATTCTTGCTGCTCAATGAACAAGACAATGAATATATTGATCTCCCAAAGGATGGCGGCAGTCTTTCACTGGACTCTTTACAGAGGGCATGCACTTTTGAGGCTGAACTTGCTTTACTACTAAGAATCAGCCACAAGTATGGGAAGTCTGGAGCACAGGTGAAGAATAAAATTGTTCGTGAGGTAATCGATTTTGTCAAAGGACATCAATCACTCTTTGATCAGGTTCTCCGTTTAGACATTGCTGAAGCAGATGAGCTAAGAATGGAGCAGATCAATTTAGTTGTTGGTATTCTTAGCAAGGTTTGGCCTTACGAAGAGAGTGACGGGTATGGTTTTGTTCAAGGGCTTTTTGGTATGATGCGTGCTCTTTTCTCACATGATTCAAAGATTCCTAGTTTTGCTCAATCAAGAGTATCGCCTGAGCCTTCAGATGCCTCGTCCAGTTACCCTACTTCTGTTGAACTTCAACAACCTACATTGAGCTTGCTCAATTCCCTTCTTTCTTCTGTTACAACTGCTCTTGAAAGGGCAGCTGAGGAGAAATCCGTATTGCTGAATAAGATCCGAGACATAAATGAACTGTCAAGGCAGGAAGTGGATGAAATCATCAATATGTGTGTCCGGCAGGACACTGTTTCATCTTCAGATAACATACAGAAAAGGAGGTACATTGCAATGGTAGAAATGTGTCGAGTTGTTGCTAATAGGGATCAGCTAATCATTTTGTTGCTCCCACTCTCCGAACATATACTAAATATCATCCTTATCCATCTTCAAGAGAGTTCTGCTGCGCTTGATTCAACCTTGACAAAAGCAATTACATATGGTTCCAAGTATGATGCACAACAAGACGTTTCTTTGTTATGTGGAAAGTTAGTCCCAACCCTTGAGCGACTTGAGTTGCTGGGTGAGGATAAAGTAGGGCACAATCTCAAAGTATTCCGCAGACTAGCAACTTCTGCCAAAGAGCTTGCAATTCAAAAATTGATTTAA 4860 0.4144 MSWSGGDWMCGACQHINFKKRDSCQTCGYPKFGGPDPTTYRYNWTETLAGDWYCTSMNCGAHNYASRSSCYRCGALKDGYSCRFGGNIDPCGGYASDCPPGWKTGDWICSSFRVSPATGEKMVSPKQLLGTIESALLGASSPTAAQRVELLHALRTSVISFQSLLSYPPPKPSDRSQLQSKSVRLPDSPPISLDDQDVHIALKLSDDLHLNEVDCVRLLVSANQEAVVLDQGLQDDILVDIQKYLEDLISSGLRQRLISLIKELNREEPSGLGGLQCERFIIDSRGSLVERQAVVSRERLILGHCLVLSILVVRTSPKDIKDIFSVLKDNASEVSESNTIVKHQITFCLLFALVIAFVSDGLSTVPDKASVLSSNTSFKHEFHELVMAAGNDPIVEGFVGGVRLAWAVYLMLIQDGAVTRETISSGSSNELGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQIKETKERSMSVLSTYRVVGSHDFAQDTNSSSLHGPMPFNSILDFVSDIYQKEPELLSGNDVLWTFANFAGEDHTNFHTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQTAGAMWPEIQEGDAKALVAYLNVLKKVVENGNPTERRTWFPDIEPLFKLLSYENVPPYLKGALRNAITAFIQVSPILKDSIWTYLEQYDLPVVVGPDIQNSPQSMGTQNQETQIGAKWDVTILQNVLVRSVRARQLVSLNEPAVNFTEWIPYSWVYDMRFELNEIEARREQYPSTISFLNLINALIAEESDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHFHMVLSMYGIKDEDYEGVVDESRLTATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVNSIIAERSSQLYGKLLENAVQLSLEIIILVFDKDLLLSDYWLPLYQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCLKVILDILEELLKPDVNALLHEFCFQRAWLLKLLAVELHAGDVSSSNHREACQTILSYLFSHGVNDVGGGQTMYPFLRHDTSQNAALGTVSKSKVFELLEIIQFRCPDSTSQLSDIVAGMKYDLSAEDILGNSGKDGVYYYSERGDRLIDLAAFHDKLWQKYNSAYSQASNIGNEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEDCSLKMAFILSQVALTCMAKLRDERFLFPGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRYFQYCQNVVDPDVPSTVLQFLLLNEQDNEYIDLPKDGGSLSLDSLQRACTFEAELALLLRISHKYGKSGAQVKNKIVREVIDFVKGHQSLFDQVLRLDIAEADELRMEQINLVVGILSKVWPYEESDGYGFVQGLFGMMRALFSHDSKIPSFAQSRVSPEPSDASSSYPTSVELQQPTLSLLNSLLSSVTTALERAAEEKSVLLNKIRDINELSRQEVDEIINMCVRQDTVSSSDNIQKRRYIAMVEMCRVVANRDQLIILLLPLSEHILNIILIHLQESSAALDSTLTKAITYGSKYDAQQDVSLLCGKLVPTLERLELLGEDKVGHNLKVFRRLATSAKELAIQKLI 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00643 1619 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Vian4g00643 1619 SUPERFAMILY Ran binding protein zinc finger-like 49 79 IPR036443 -
Vian4g00643 1619 Gene3D - 1 35 - -
Vian4g00643 1619 Gene3D - 45 79 - -
Vian4g00643 1619 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
Vian4g00643 1619 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Vian4g00643 1619 MobiDBLite consensus disorder prediction 168 186 - -
Vian4g00643 1619 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Vian4g00643 1619 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 122 938 IPR021827 GO:0005643
Vian4g00643 1619 SMART zf_4 6 30 IPR001876 -
Vian4g00643 1619 SMART zf_4 50 76 IPR001876 -
Vian4g00643 1619 Coils Coil 1463 1483 - -
Vian4g00643 1619 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Vian4g00643 1619 Pfam Nuclear pore complex scaffold, nucleoporins 186/192/205 146 227 IPR021827 GO:0005643
Vian4g00643 1619 Pfam Nuclear pore complex scaffold, nucleoporins 186/192/205 503 929 IPR021827 GO:0005643
Vian4g00643 1619 Pfam Nuclear pore complex scaffold, nucleoporins 186/192/205 997 1194 IPR021827 GO:0005643
Vian4g00643 1619 MobiDBLite consensus disorder prediction 168 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00643 Vian-Chr4 7744965 7783832 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00643 K14310 - zju:107434816 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00643 4 7744965 7783832 Vian1g00958 1 10107156 10108288 PCT