Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00958 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGAGGACCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGGGACTGGTTCTGCAACTGTGGAGGTCACAACTATGCCAGTCGATCAAACTGCTACAGATGTGGTGCAATGAAAGATGATTATCCTTCAGGATATGCCAACAACTCTGGAGGGTATGGATCTGACACTTTCCCCCCAGGATGGAAGAGTGGAGACTGGCTTTGCCCAAGACATGGATGTGGAGTGCACAACTATGCCAGCAGGACAGAATGCTATAAATGCAAAATGCCAAGGGATTTTGGTGGTGCAGATTGA 402 0.4826 MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGGHNYASRSNCYRCGAMKDDYPSGYANNSGGYGSDTFPPGWKSGDWLCPRHGCGVHNYASRTECYKCKMPRDFGGAD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00958 133 Gene3D - 1 35 - -
Vian1g00958 133 Gene3D - 93 129 - -
Vian1g00958 133 Gene3D - 42 78 - -
Vian1g00958 133 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Vian1g00958 133 SUPERFAMILY Ran binding protein zinc finger-like 92 129 IPR036443 -
Vian1g00958 133 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Vian1g00958 133 Pfam Zn-finger in Ran binding protein and others 98 126 IPR001876 -
Vian1g00958 133 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Vian1g00958 133 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Vian1g00958 133 SUPERFAMILY Ran binding protein zinc finger-like 46 76 IPR036443 -
Vian1g00958 133 SMART zf_4 6 30 IPR001876 -
Vian1g00958 133 SMART zf_4 50 73 IPR001876 -
Vian1g00958 133 SMART zf_4 100 126 IPR001876 -
Vian1g00958 133 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Vian1g00958 133 PANTHER ZINC FINGER PROTEIN 44 129 - -
Vian1g00958 133 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00958 Vian-Chr1 10107156 10108288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00958 - - gmx:100780120 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00643 4 7744965 7783832 Vian1g00958 1 10107156 10108288 PCT