Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00640 ATGGGGACGACGAAGAGCAGCTCCAATTCTACCTCAAAATCTGATCATAATAATAACAATAATGTCAATGGCGACAAAGACAAACACAACATCACCAGAATGGTGTTGAATGTCTACGACCTCACCCCTCTCAACAATTATTTGTATTGGTTTGGCTTTGGAATCTTTCATTCTGGCATTGAAGGCCAAATAAACATGCATCCTTCTGAGTTTCGAACTTTCATTGAGAGTATAGCTAATGAGTATCATGGAGATACTTACCACCTTATATCTAAGAACTGCAATCATTTTACGGATGATGTTTCAAATAGATTGAATGGAAAACGAATCCCAGGTTGGGTCAATCGTCTTGCTAGGCTAGGTTCACTTTGCAGTTGCCTACTTCCTGAGTGTGTTGAAGTAACTACTGTTAAACAACTACCGGAATACCATGACTGTTCAGAAGATGAAATCACTGATTCTCTTTCGTCTGCATCACCATGTGCATCTCAAGCAACATCAGTAATGGACGATGACCAAGAAAAACACCTTTTGTCACCTTTTGCCAGCAAAGCAGAAAATGTTTCGTTTGTTAAAGAGACACCATTAAAACGAACGTCACACGATGGAGGGATGATTGGAGCCTAA 627 0.3987 MGTTKSSSNSTSKSDHNNNNNVNGDKDKHNITRMVLNVYDLTPLNNYLYWFGFGIFHSGIEGQINMHPSEFRTFIESIANEYHGDTYHLISKNCNHFTDDVSNRLNGKRIPGWVNRLARLGSLCSCLLPECVEVTTVKQLPEYHDCSEDEITDSLSSASPCASQATSVMDDDQEKHLLSPFASKAENVSFVKETPLKRTSHDGGMIGA 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00640 208 SMART DUF862_2a 32 137 IPR008580 GO:0008233
Vian4g00640 208 MobiDBLite consensus disorder prediction 1 27 - -
Vian4g00640 208 ProSiteProfiles PPPDE domain profile. 1 132 IPR008580 GO:0008233
Vian4g00640 208 MobiDBLite consensus disorder prediction 1 19 - -
Vian4g00640 208 Pfam PPPDE putative peptidase domain 65 129 IPR008580 GO:0008233
Vian4g00640 208 Gene3D PPPDE domains 62 149 IPR042266 -
Vian4g00640 208 PANTHER DESUMOYLATING ISOPEPTIDASE 33 61 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00640 Vian-Chr4 7704900 7707412 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00640 K22763 - gmx:100810582 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00640 4 7704900 7707412 Vian4g00640 4 7704900 7707412 ECH
Vian1g00947 1 10014680 10018547 Vian4g00640 4 7704900 7707412 PCT