Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00947 ATGGGTGTGGAGAATGCCTCGAAGTCCATTTCCACCTCACAATGCGATGACCAACTTAGTAACAGCAAAATCAACACACTCGTGCGATTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGGTTGGATTTGGCATATTTCATTCTGGCGTTGAAGTGCATGGTAAGGAGTATGGTTTTGGAGCCCATGATTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGAAGTGCCCTGGATTCATATATAGATGTTCCATCACTTTGGGTCAAACTAATATGAGTGCTTCTGACTTTCGTACATTTATTGAAAACATGGCTTCTGAGTATCATGGAGATACCTATCACCTTATAACTAAGAACTGCAATCATTTTACAGAAGATCTCTCCAATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTATGCAGTTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCAGAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGCGAGTCCACAGAAATAGATGAGGAGCAAGAAAAGCACCTTCTTTCATCATCAACTGTAACTGAGGATGTTACTTTCGTTAGAGAAAGCCAAGCAAAATAA 675 0.4163 MGVENASKSISTSQCDDQLSNSKINTLVRLNVYDLTPVNNYVYWVGFGIFHSGVEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSITLGQTNMSASDFRTFIENMASEYHGDTYHLITKNCNHFTEDLSNRLTGKQIPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSEDEFVESLSPATPRESTEIDEEQEKHLLSSSTVTEDVTFVRESQAK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00947 224 Pfam PPPDE putative peptidase domain 28 160 IPR008580 GO:0008233
Vian1g00947 224 ProSiteProfiles PPPDE domain profile. 26 163 IPR008580 GO:0008233
Vian1g00947 224 Gene3D PPPDE domains 21 178 IPR042266 -
Vian1g00947 224 PANTHER DESUMOYLATING ISOPEPTIDASE 26 204 IPR008580 GO:0008233
Vian1g00947 224 MobiDBLite consensus disorder prediction 193 207 - -
Vian1g00947 224 SMART DUF862_2a 26 164 IPR008580 GO:0008233
Vian1g00947 224 MobiDBLite consensus disorder prediction 182 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00947 Vian-Chr1 10014680 10018547 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00947 - K22763 gmx:100778961 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00947 1 10014680 10018547 Vian1g00947 1 10014680 10018547 ECH
Vian1g00947 1 10014680 10018547 Vian4g00640 4 7704900 7707412 PCT