Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00595 ATGTGTACCTCTAGCCAATCATTGCCACCTCGAGCTGGTCATTGTACAGTTTCTTTGGGCAACAGTTTGTTTGTTTTTGGGGGCTTTACAGAAGCTCAATGCCTATACAATGACTTGTATATGCTTGACATTGAGACTTTTGTGTGGACGAAGGTGGAAACTACACCTAGTGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGATCCACATATGGGGGGTGCTCTTGTGTTTTTGGGAGGTTGTAATAGAAATCTGGAGGCCCTGGATGATATGTATTACCTATACACAGGTATTGCACAGGAAAGAGAACTCAGACCAGAGAAGTTATCCTTAAGGAAGCAATTGAAGCTGAAATGTCAAGAGCAGAATCTCAATCTTGTCCAAAACCCAGTTCTGTGTGGATATGGAGTGGATGCTGGCAGTAATCATCCTATGTCAATCTTAAACTATAGCCAACAAAGTAAACTAAATATCCCAGTAAGGCAATCCCTGCCTCCTGGAAAGAGAATGTTTCATGCCAAAGTTACGGAAAAAATCTCAGCAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCATGGAATTCTGTTTTCAAACAAGCCAAACATTCAAAGTCCAGTTGCTAATACTTCCAATAGGAAAAGGTCTGCTGGTGAAATTGAAAATGTTGATTTAAATGACATGCTTACACAATCAGACAATGTAACAACTTCTGCAGTGCTCAGGCAAGAGAAAATAGAAAATCAACCGGAAGTACGGGGAGAGAGTTCAGAATTTCTTGAACGCCATAAAGAAGCAGATACTATTGTTGCGTCAAGTATCCCAACAACAGCTGCGGACTCCTTAAAGGATTCTGTCAACCCAGAACCTGAAGCTGTTTCTTTGAATCTAAATGATGAGAACAATGACTCATCAAAACCCTTAATTGAGAGCTTGAAAAACGATGGATCCAATGATGAGACAAGCTCCAAAGGTGAAATGCAAATTGGAGATGAAATAAATGTGCCAGTTTCCAATTGTGAAATTTCAGGACAAACGAGTGATGCACCAAACTCTAATGCTGATGTCCTGAAACCTGCAGCAGCTGAGAGTTCTGTTTCTCCACCAAATCAAGGTGTGACAGATGATTGCACAACTCCAAGGACAGAAGGCCAAAGTGAACAAGAAAAATTAACATGA 1194 0.4054 MCTSSQSLPPRAGHCTVSLGNSLFVFGGFTEAQCLYNDLYMLDIETFVWTKVETTPSGPSARFSVAGDCLDPHMGGALVFLGGCNRNLEALDDMYYLYTGIAQERELRPEKLSLRKQLKLKCQEQNLNLVQNPVLCGYGVDAGSNHPMSILNYSQQSKLNIPVRQSLPPGKRMFHAKVTEKISAGYTIETVIDGKPLHGILFSNKPNIQSPVANTSNRKRSAGEIENVDLNDMLTQSDNVTTSAVLRQEKIENQPEVRGESSEFLERHKEADTIVASSIPTTAADSLKDSVNPEPEAVSLNLNDENNDSSKPLIESLKNDGSNDETSSKGEMQIGDEINVPVSNCEISGQTSDAPNSNADVLKPAAAESSVSPPNQGVTDDCTTPRTEGQSEQEKLT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00595 397 Gene3D - 2 108 IPR015915 GO:0005515
Vian4g00595 397 PANTHER KELCH REPEAT DOMAIN 9 353 - -
Vian4g00595 397 MobiDBLite consensus disorder prediction 279 397 - -
Vian4g00595 397 MobiDBLite consensus disorder prediction 343 358 - -
Vian4g00595 397 MobiDBLite consensus disorder prediction 369 391 - -
Vian4g00595 397 Pfam Galactose oxidase, central domain 10 57 - -
Vian4g00595 397 MobiDBLite consensus disorder prediction 296 333 - -
Vian4g00595 397 SUPERFAMILY Kelch motif 8 97 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00595 Vian-Chr4 7154773 7158607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00595 9 97 Acyl Lipid Metabolism Gene Families AT3G05420 30.769 3.55e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00595 - - gmx:100785267 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00595 4 7154773 7158607 Vian4g00595 4 7154773 7158607 ECH
Vian1g00843 1 8767166 8772506 Vian4g00595 4 7154773 7158607 PCT