Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00843 ATGAGGTGGGAAAAGGTTGAGGGGAAGGCGATGGGCACAGAGGGTGGTGGAGGTGGAATTGAGGTGTATGGGCCAGGGAAAAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGGAGACTTGTCTATGTCTTCGGTGGATACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAGCAGACTTGGAGCCAACCCATTGTGAAAGGCTCCCCACCTACTCCTAGAGACAGCCACACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACGGATGGGATGAACCCTCTCAAGGATTTGCACATATTGGACACTTCATTGCATACATGGGTTTCTCCCACCATAAGAGGAGAAGGGCCACCGGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGAAAACGCCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAGTAATAATGAGGTCTACTACAATGATCTTTACATACTAAATACAGAGACGTTTGTCTGGAAGTGTGCTACTACATCAGGCACTCCACCTTCTCCTCGTGATAGCCACTCTTGTTCATCTTGGAAAAATAAAATTATTGTAATAGGAGGTGAAGATGGACATGATTATTACTTGTCCGATGTCCATATCCTTGATACTGATACTTTAATCTGGAGAGAGCTGAGTACATCAGGCCAATTGTTGCCTCCTCGAGCTGGTCATTCAACTGTTTCTTTTGGCAAGAACTTGTTCATTTTTGGGGGATTTACAGATGCACAAAATCTCTATAATGACCTTTATATGCTTGATATTGACACCGGCGCTTGGACAAATGTTACATCTTCAACAAATGGTCCGTCTGCTAGATTTTCAGTGGCTGGTGACTGTTTAGACCCTTTTAAGGGGGGAGTTCTTGTGTTCATAGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCTCGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAATTGAAGTGCCAAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTAGCAAGATATGGTGTTGGTTCTGATATGGGCCAGATCATGTCAGTGTTGAACTATAGCCAGCAAAGTAGGCTAAATATCCCAGTAAACCAATCCCTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATACTGTTTTTAAACAAGCCAAATTCTCTGTACTCTTCTGCCCATACTCCCAGTAGGAAAAGGACTCTTAGTGAGATTGATAGTGTTGTCTTGAATGGTATACACTCTAACCAATTAAAGACTCCTAAAGTACTCAAGCAAAATCAAATGGAAAACCAAGAAGCATTTTGTGGAGACAGTTCAGAATCTCATGAACACCGCACTGAATCCATTGCAGTGGTAATGTCAAGTAACCCAGTGACTGCCGATGCTTCTGATACCCATAAGGTTTCTGCCAACCAAGAACCAGAAGCTGCTGCTTTGAATCAAAATGACGAAAAACATGAAACACCCATATCCTTAAGTGAAAACTTGAAAAAAGATGGTGCAAATGATGTGATATGTTCCAGAGATGAGGTGCAAACAAATGATCAAACAAATGTGCCAATTTCCAACTTTGAACTTACAAGACATGATACAAAATTTGATGCTCCAAATTACAACGCTGAATTTCAGAAACCTGCTGCATCTGAGAGTGTTTTGTGCCTGTCAAATCAAGGCATATTTTCAGAGGTAGGGTTTCAAACTGGCTTGGATAGGGAACAAACATTTCCAGCTTGA 1878 0.4228 MRWEKVEGKAMGTEGGGGGIEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPIVKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLHTWVSPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSADSNNEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFIFGGFTDAQNLYNDLYMLDIDTGAWTNVTSSTNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPSQNQVLARYGVGSDMGQIMSVLNYSQQSRLNIPVNQSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYSSAHTPSRKRTLSEIDSVVLNGIHSNQLKTPKVLKQNQMENQEAFCGDSSESHEHRTESIAVVMSSNPVTADASDTHKVSANQEPEAAALNQNDEKHETPISLSENLKKDGANDVICSRDEVQTNDQTNVPISNFELTRHDTKFDAPNYNAEFQKPAASESVLCLSNQGIFSEVGFQTGLDREQTFPA 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00843 625 PANTHER KELCH REPEAT DOMAIN 2 119 - -
Vian1g00843 625 Gene3D - 2 153 IPR015915 GO:0005515
Vian1g00843 625 Gene3D - 154 402 IPR015915 GO:0005515
Vian1g00843 625 Pfam Galactose oxidase, central domain 40 89 - -
Vian1g00843 625 Pfam Galactose oxidase, central domain 186 231 - -
Vian1g00843 625 Pfam Galactose oxidase, central domain 237 283 - -
Vian1g00843 625 SUPERFAMILY Galactose oxidase, central domain 182 318 IPR011043 -
Vian1g00843 625 SUPERFAMILY Galactose oxidase, central domain 24 229 IPR011043 -
Vian1g00843 625 SMART kelc_smart 92 141 IPR006652 GO:0005515
Vian1g00843 625 SMART kelc_smart 41 91 IPR006652 GO:0005515
Vian1g00843 625 SMART kelc_smart 198 248 IPR006652 GO:0005515
Vian1g00843 625 SMART kelc_smart 249 295 IPR006652 GO:0005515
Vian1g00843 625 Pfam Kelch motif 128 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00843 Vian-Chr1 8767166 8772506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00843 55 314 Acyl Lipid Metabolism Gene Families AT3G05420 29.964 5.68e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00843 - - gmx:100820222 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00843 1 8767166 8772506 Vian1g00843 1 8767166 8772506 ECH
Vian1g00843 1 8767166 8772506 Vian4g00595 4 7154773 7158607 PCT