Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00588 ATGCGGCGACGGGCCGCCGATTTTCGGCGCCCGGTTCGGCGGCGGTTCGCTTATTGGATCTGGTTGCTTCTCGGCGCCTTCTCTCTTGCCGGTCTTGTTTTGTTCTTCCTGCAACATCATCACCGCGATTATCGCGTACATAGCCCCTTTCTGGAGAGAAATGCTAAAGTAGAAAATTCTGCTAAGAGATTGAATTTTACTGAAGAAATTTTAAGTGCAACATCCTTCTCACGGCAACTATCAGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTTGCTTGGGAGCTTAGCTCAAAAATTAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTGACCATGGAGGAAGCTGGGCCAGTTATTAAAAGCCTGTCTTCTCTAATTTTCAAGGCACAGGATGTCCATTACGACATTGCAACCACTATAGTAACAATGAAATCATATATTCAAGCACTTGAAGAACGTGCAAATAAAGCAACAATTCAAAGCACCGTGTTTGCTCAAGTATCAGCTGAAGCACTACCCAAGAGTCTTCATTGCTTAAATGTGAAACTTATGGCTGATTGGCTAAAGGTGACATCCCGGCAAAAATTTTCACATGAGAGTAGAATCTCTCCCCAGCTCACAGATAATAATCTATATCACTTCTGCATTTTTTCAGATAATGTACTGGCAACATCTGTAGTTGTTAACTCTACAGTCATCAATGCAAACCATCCAAAACGCTTCGTCTTTCATATTGTTACCGATGGTATTAATTATGGAGCAATGAAAGCATGGTTCCTCAGTAATGACTTAAAAGGGGCTACCATAGAGGTGCAGAATATTGAGGAATTTTATTGGTTGAATGAATCTTATGCTCCAATGGTCAGACAGCTACACAATCCAGAATCACGAGCCTTTTACTTTGGGCCTTATCAAGGTGTAAATGTTGAGCCAAAATTGCAGAATCCCAAGTTTGTGTCTTTACTAAATCATCTTCGGTTTTACATCCCCGAGATTTATCCATTACTTGAGAAGATTGTTTTCCTTGATGATGATGTTGTTGTTCAGAAGGACCTAAGCCCACTTTTCTCATTAGATTTGCATGGAAATGTGAATGGTGCCGTTGAAACATGTCTAGAAGCATTTCACAGGTACTACAAGTATCTCAACTTTTCAAATTCGATTATAAGCTCAAAGTTTGATCCACAGGCATGTGGATGGGCCTTTGGTCTGAATATTTTTGACCTGGGTGCATGGAGGAAAGCAAATGTCACCGCGAAGTATCATTATTGGCAAGAGCAGAATGCTGATGGGACACTCTGGAAGCTTGGTACACTTCCGCCTGCTCTTCTAAGCTTTTATGGCTTGACAGAACCACTTGACAGAAGATGGCATGTATTAGGATTGGGTTATGACCTAAATATTGACAGCCGCCTGATTGAAAGTGCAGCAGTTATTCACTTCAATGGGAACATGAAACCATGGCTGAAGTTAGCTATAGGCAGGTATAAGCCATTATGGCACAGGTACATAAATCAAAGTCACCCTCATCTACAAGATTGTGCTACCGGTTAA 1605 0.4187 MRRRAADFRRPVRRRFAYWIWLLLGAFSLAGLVLFFLQHHHRDYRVHSPFLERNAKVENSAKRLNFTEEILSATSFSRQLSEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGEPVTMEEAGPVIKSLSSLIFKAQDVHYDIATTIVTMKSYIQALEERANKATIQSTVFAQVSAEALPKSLHCLNVKLMADWLKVTSRQKFSHESRISPQLTDNNLYHFCIFSDNVLATSVVVNSTVINANHPKRFVFHIVTDGINYGAMKAWFLSNDLKGATIEVQNIEEFYWLNESYAPMVRQLHNPESRAFYFGPYQGVNVEPKLQNPKFVSLLNHLRFYIPEIYPLLEKIVFLDDDVVVQKDLSPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWAFGLNIFDLGAWRKANVTAKYHYWQEQNADGTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDSRLIESAAVIHFNGNMKPWLKLAIGRYKPLWHRYINQSHPHLQDCATG 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00588 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
Vian4g00588 534 CDD GT8_like_1 229 522 - -
Vian4g00588 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 56 532 IPR029993 GO:0047262
Vian4g00588 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Vian4g00588 534 FunFam Hexosyltransferase 231 527 - -
Vian4g00588 534 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00588 Vian-Chr4 7041105 7044492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00588 1 531 Glycosyltransferase AT2G20810 53.545 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00588 K13648 - gmx:100817381 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00588 4 7041105 7044492 Vian4g00588 4 7041105 7044492 ECH
Vian1g00855 1 8912872 8916096 Vian4g00588 4 7041105 7044492 PCT