Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00855 ATGCGACGACGGGCTGCCGATTTTCGGCGCCCGGTTCGACGGAGGTTTTCATATTGGATCTGGCTTCTCCTCGCCTTCTCCTCTATTATTGCTCTCCTTCTCTTCCTTCTCCAACACAACCACCACCACCGAGATCCGCATCATTATCCTTTGCCGGAGAGAAATGAAAGAGTTGAACAATTTGCTAAGGAGAGTTTGAATTTTACTCAAGAGATTTTAAGTGTTACATCATTCTCACGACAGTTAGCAGAACAAATGATTGTGGCCAAAGCTTATGTGGTTATTGCCAAAGAGCATAACAATCTTCACCTTGCCTGGCAGCTTAGCTCAAAGATCAGGAATTGCCAACTTTTGCTTTCAAAAGCGGCCATCACAGGTGAGCCCATCACGTTGGAGGAAGCTGAGCCAATTATTAGAAGCCTTTCTCTTCTGATGTTTAAGGCACAAGATATCCATTATGACATTGCAACCACAATAGTGACCATGAGATCACATATTCAAGCTCTAGAAGAGCGAGCCAATGCAGCAATAGTTCAAAGCACCGTGTTTGGTCAAATAGCAGCTGAAGCAGTACCCAAAAGTCTTCACTGTCTAAATGTTAAACTCATGTCCGATTGGCTAAGGATGCCTTCCCTGCAGGAACTCTCAGATGATAGGAAAAACTCCCCACGGCTTGTGGACAACAATCTATATCATTTCTGCATATTTTCAGATAATGTACTGGCAACATCTGTAGTTGTAAACTCAACTGTCTCCAATGCTGACCATCCAAAGCAATTGGTCTTTCACATTGTCACTACTGGAGTCAGTTATGGGGTAATGCTAGCGTGGTTCCTACGCAATGACTTTAAAGGAGCCACCATAGAGATACAGAACATTGAGGAGTTTCATTGGTTGAATGCATCTTATTCTCCACTTGTCAAGCAGCTCCTCAATCCTGATTCAAGAACCTTCTATTTTGGAGCATATCAAGATTTAAATGTTGAACCCAAAATGCGGAATCCCAAGTATCTTTCTTTATTGAATCATCTTCAGTTTTACATCCCTGAGATTTATCCGCAACTCGAGAAGGTTGTCTTCCTGGATGATGACCTTGTAGTCCAGAAGGATCTAACCCCACTTTTCTCACTGGATTTGCATGGGAATGTGAATGGTGCTGTGGAAACTTGTCTTGAAGCATTTCATCGATACTACAAGTATCTCAATTTCTCAAATTCAGTTATTAGCTCGAGATTTGATCCACAGGCATGTGCATGGGCATTTGGTATGAACATTTTTGACTTGGTTGCATGGAGGAAGGCAAATGTGACCGGAAGATATCACTATTGGCAAGAGCAGAATGCTGATGGGACACTCTGGAAGCTGGGGATACTTCCTCCTGCTCTTCTGTGTTTTTATGGTTTGACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTAAATATTGACAATCGACTTATTGAAAGTGCGGCAGTCATTCACTACAACGGGAACATGAAGCCGTGGTTGAAGTTAGCCATAGGCAGGTACAAGCCACTATGGGACAAGTACATAAATCAAAGTCACCCTCATCTTCAAGATTGTGTCACAAGTTGA 1611 0.4277 MRRRAADFRRPVRRRFSYWIWLLLAFSSIIALLLFLLQHNHHHRDPHHYPLPERNERVEQFAKESLNFTQEILSVTSFSRQLAEQMIVAKAYVVIAKEHNNLHLAWQLSSKIRNCQLLLSKAAITGEPITLEEAEPIIRSLSLLMFKAQDIHYDIATTIVTMRSHIQALEERANAAIVQSTVFGQIAAEAVPKSLHCLNVKLMSDWLRMPSLQELSDDRKNSPRLVDNNLYHFCIFSDNVLATSVVVNSTVSNADHPKQLVFHIVTTGVSYGVMLAWFLRNDFKGATIEIQNIEEFHWLNASYSPLVKQLLNPDSRTFYFGAYQDLNVEPKMRNPKYLSLLNHLQFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSVISSRFDPQACAWAFGMNIFDLVAWRKANVTGRYHYWQEQNADGTLWKLGILPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHYNGNMKPWLKLAIGRYKPLWDKYINQSHPHLQDCVTS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00855 536 Pfam Glycosyl transferase family 8 235 510 IPR002495 GO:0016757
Vian1g00855 536 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 534 IPR029044 -
Vian1g00855 536 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 233 533 IPR029044 -
Vian1g00855 536 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 63 534 IPR029993 GO:0047262
Vian1g00855 536 CDD GT8_like_1 231 524 - -
Vian1g00855 536 FunFam Hexosyltransferase 233 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00855 Vian-Chr1 8912872 8916096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00855 1 533 Glycosyltransferase AT2G20810 54.461 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00855 K13648 - gmx:100805886 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00855 1 8912872 8916096 Vian1g00855 1 8912872 8916096 ECH
Vian1g00855 1 8912872 8916096 Vian4g00588 4 7041105 7044492 PCT