Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00581 ATGTCGAACCTGCTTCTTCTACCCTCTCTTCCCCTCACCATTTCGCCTAACCGCTTTCAAACTTTTTCTTCCGCTTGTCCTCTTCAATTCCAATGCCGATTCTCACTTTCTATCCTCTCTCCTCCTCACCACTCTCTCTCTCCTTTCCGCTCCCACGCGCGCAGAAGAGAACCTTCCCTTCGCGTTTTCGATTCCTCTTCCGACGCCATAACCAACGAAGAATTGAAAGAAGTGGCAAAGGAAGAGGGCGTTGAAGATCCGAGTGTTGGGATTACGGACGACGAATATCCAAGTGGCGAGTTCGATTTCAAACCGGTTACCGGATGGAGAAGCTTCCTCGTTAAGCTTAAGATGCTGGTTGCGTTCCCATGGGAGCGTGTGCGCAAGGGAAGCGTTCTCACAATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTCCGGGACTATCTTTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATACGATCCTCGTATTTCTGGGATCTATCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCATATATCAGATTTCAAAAAATCAGGAAAATTTATTCTGGCTTATGTGCCTTTATGTCAAGAAAAAGAATATTACCTTGCATGTGCATGTGACGAGATATACTCCCCACCCAGTGCATACTTTTCTTTGTTTGGATTGACTGTTCAAGCCTCATTCCTTAGAGGTATTTTAGATAACATAGGAATTGAACCGCAAGTGGAAAGGATTGGAAAATACAAAAGTGCAGGTGATCAACTAGCTCGAAGAACCATGTCTGAGGAAAATTGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTGGATAAAGTCTCTTCTGCCAAAGGAAAAAGTAAAGAAGATATTGAGAAACTCATAAATGAAGGTGTTTATCGAGTAGACAAGCTGAAAGAAGAAGGACTCATATCAAATATAATCTATGATGATGAGATTATTACCATGTTGAAGGAGAGACTTGGAGTGAAACTTGATAAAGATTTGCCAATGGTGGACTACAGGAAATACTCTCGAGTTAGGAAATGGACTGTTGGAATATCAGGAGGTGGAGAACTTATAGCCATTATCCGAGCATCAGGGAGCATTAGTCGTGTAGAGAGTCAATTAAGTGTCTCTAGCTCAGGCATCACTGCAGAGAAGTTTATTGAAAAGATTCGAACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATCATTAGAATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATCTGATGTGGAGAGAAATCCGGCTTTTGGCTGCTAAAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGCGGAGGGTACTATATGGCAATGGGAGCTGATGCTATTGTTGCAGAAAGCCTTACCTTAACCGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAACAACGTCCTTTCAGACCAGATGAAGCAGCGTTATTTGCCGAATCTGCTAGGCATGCTTATAAACAATTTCGGGACAAGGCTGCATTGTCCAGATCAATGACCGTAGAAAAGATGGAGGAGGTTGCACAGGGAAGGGTTTGGACTGGTAACGACGCAGCATCGCGTGGTTTAGTTGATGCTATTGGCGGGCTTTCCCGTGCTATTGCCATAGCAAAAGTTAAGGCCGATATACCTCAAGACAGTCAGGTTACACTTGTGGAGATCTCCAGACCCAGTCCTTCTCTACCCGAGATCTTGTTAGGTGTTGGGAGTTCCCTCGTTGGAGCTGACAGAATGGTGAAGGAACTGCTACAAGGCATGACATTTTCTGATGGAGTTCAAGCCCGGATGGATGGAATCATGTTTCAGACATTGGAAGAATATCCTTTTGGAAATCCCATTTTGTCAATAATAAAATCTTACCTCAGTTCCCTGTAG 2046 0.433 MSNLLLLPSLPLTISPNRFQTFSSACPLQFQCRFSLSILSPPHHSLSPFRSHARRREPSLRVFDSSSDAITNEELKEVAKEEGVEDPSVGITDDEYPSGEFDFKPVTGWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGWGKVEEIRRHISDFKKSGKFILAYVPLCQEKEYYLACACDEIYSPPSAYFSLFGLTVQASFLRGILDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTALLDNIYTNWLDKVSSAKGKSKEDIEKLINEGVYRVDKLKEEGLISNIIYDDEIITMLKERLGVKLDKDLPMVDYRKYSRVRKWTVGISGGGELIAIIRASGSISRVESQLSVSSSGITAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAAKKPVIASMSDVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAALFAESARHAYKQFRDKAALSRSMTVEKMEEVAQGRVWTGNDAASRGLVDAIGGLSRAIAIAKVKADIPQDSQVTLVEISRPSPSLPEILLGVGSSLVGADRMVKELLQGMTFSDGVQARMDGIMFQTLEEYPFGNPILSIIKSYLSSL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00581 681 Gene3D - 377 524 - -
Vian4g00581 681 SUPERFAMILY ClpP/crotonase 381 586 IPR029045 -
Vian4g00581 681 Pfam Peptidase family S49 198 350 IPR002142 GO:0006508|GO:0008233
Vian4g00581 681 Pfam Peptidase family S49 449 599 IPR002142 GO:0006508|GO:0008233
Vian4g00581 681 SUPERFAMILY ClpP/crotonase 122 339 IPR029045 -
Vian4g00581 681 CDD S49_Sppa_N_C 381 595 IPR047272 -
Vian4g00581 681 Gene3D - 525 651 - -
Vian4g00581 681 PIRSF Protease_4_SppA 69 680 IPR004634 GO:0006465|GO:0008233|GO:0016020
Vian4g00581 681 PANTHER PROTEASE 4 87 680 - -
Vian4g00581 681 CDD S49_SppA_67K_type 133 346 IPR047217 -
Vian4g00581 681 Gene3D - 273 366 - -
Vian4g00581 681 Gene3D - 130 272 - -
Vian4g00581 681 NCBIfam signal peptide peptidase SppA 381 595 IPR004635 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00581 Vian-Chr4 6936526 6955259 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00581 K04773 - gmx:100781522 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00865 1 9018118 9027480 Vian4g00581 4 6936526 6955259 PCT