Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00865 ATGTCACGGGCTCGTATTGCCGTCCACCGCTTCCGCTGTACCTACGCCGCATTATCGTCGATCACCTCATCTTCATCTGCAGTTACACGCTTTCAGTTCCAATGTCCACAACAACATCTCACGCGCGCATCCCTCCCCTTCCACTTCCACTATCGTTATTCTTCGTCTGTCCCCAAACAAACCTTGAACTGTGGTGTCGAGAATTATCCGAGTGGAGACTTTGATTTCACGCCTCTCACTGGCTGGAAAAAATTCATCGTCAAGCTCAAGATGCTAACGGCCTTACCCTGGCACCGGCTCCGATACGGCACCGTTTTGACAATCAAGTTGCGCGGCCAGGTATCGGATCAGCGGAAGAGTAGGTTCTCTCGGGGATTATCTCTGCCTCAAATCTGTGATAATTTCTTGAAGGCAGCTTATGATCCTCGAATTTCCGGTATCTATCTCCACATTGATATTTTAAATTGCGGCTGGGCAAAGGTTGAAGAAATTCGAAGGCACATATTCGATTTCAGAAAGTCAGGAAAATTTATTGTGGCTTATGTCCCTTCCTGTCGAGAAAAGGAATATTATATTGCAAGTGCGTGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGATTGACTGTTCAGGCTCCATTCTTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTAGAAAGGATTGGCAAGTACAAAAGTGTAGGAGATCAACTTACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTTACTTCATTGCTTGATAATATCTATACACATTGGCTGGACAAAGTCTCTGCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATAAAGGTGTTTATCAAGTAGAGACACTTAAAGAGGAGGGCTTCATATCAGACATAATCTATGAGGATGAGGTTATTACTAGGTTGAAGGAGAGACTTCAAGTAAAAACAAATAAAAATCTGCCTATGGTTGATTACAGAAAATACTCCGGAGTTAGGAAATCAACTCTTGGACTATCAAATGGTAAAGATTTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATTGAGAGTCCACTAGGTGCCCGTAGCTCAGGTATCATTGGAGAGAAGTTAATTGAGAAGATACGCAGTATAAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTGGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAGCTTAACCTTGGGAAACTCTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTGCGGGCAGCTGAACAGCGTTCATTTAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGTTCAGCATGCTTATAAACAATTTCGAGATAAAGCAGCCTTTTCTCGATCTATGACTGTAGACAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACTGGCAAGGATGCAGCTTCTAATGGTTTGATTGATGCTATTGGTGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCGGTATACCTCAAGATAGACAGGTTACTGTTGTGGAGGTCACCAGACCCAGCCCTTCTCTGCCCGAGATTTTGAGTGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTAAATGAATTACTACAGGACTTGACATTTTCCAATGGAGTCCAAGCACGGATGGACGGAATCGTGTTTGAGAAATTGGAAGGATATCCATACGCCAACCCCATTTTGGCATTGATGAAAGATCATCTTAGTTCCCTTTAG 1965 0.4346 MSRARIAVHRFRCTYAALSSITSSSSAVTRFQFQCPQQHLTRASLPFHFHYRYSSSVPKQTLNCGVENYPSGDFDFTPLTGWKKFIVKLKMLTALPWHRLRYGTVLTIKLRGQVSDQRKSRFSRGLSLPQICDNFLKAAYDPRISGIYLHIDILNCGWAKVEEIRRHIFDFRKSGKFIVAYVPSCREKEYYIASACEEIYAPPSAYFSLFGLTVQAPFFRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTSLLDNIYTHWLDKVSAARGKKREDIENFINKGVYQVETLKEEGFISDIIYEDEVITRLKERLQVKTNKNLPMVDYRKYSGVRKSTLGLSNGKDLIAIIRASGSIRRIESPLGARSSGIIGEKLIEKIRSIRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSKSVQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASNGLIDAIGGLSRAVAIAKLKAGIPQDRQVTVVEVTRPSPSLPEILSGLGNSLVGVDRTLNELLQDLTFSNGVQARMDGIVFEKLEGYPYANPILALMKDHLSSL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00865 654 PIRSF Protease_4_SppA 43 653 IPR004634 GO:0006465|GO:0008233|GO:0016020
Vian1g00865 654 SUPERFAMILY ClpP/crotonase 90 310 IPR029045 -
Vian1g00865 654 CDD S49_SppA_67K_type 106 319 IPR047217 -
Vian1g00865 654 NCBIfam signal peptide peptidase SppA 355 568 IPR004635 GO:0006508|GO:0008233
Vian1g00865 654 PANTHER PROTEASE 4 67 653 - -
Vian1g00865 654 Gene3D - 348 499 - -
Vian1g00865 654 Gene3D - 104 339 - -
Vian1g00865 654 Pfam Peptidase family S49 422 572 IPR002142 GO:0006508|GO:0008233
Vian1g00865 654 Pfam Peptidase family S49 171 323 IPR002142 GO:0006508|GO:0008233
Vian1g00865 654 SUPERFAMILY ClpP/crotonase 354 559 IPR029045 -
Vian1g00865 654 CDD S49_Sppa_N_C 354 568 IPR047272 -
Vian1g00865 654 Gene3D - 505 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00865 Vian-Chr1 9018118 9027480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00865 K04773 - gmx:100809623 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00865 1 9018118 9027480 Vian1g00865 1 9018118 9027480 ECH
Vian1g00865 1 9018118 9027480 Vian4g00581 4 6936526 6955259 PCT