Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00429 ATGGTTTCAATGTCGCTCTGTCTTTCTTCTTCCTTTATTCCTTCTCCCATTCCCCATACCAAATTTCCCACAGCTGAAGATCCGATTTTTCGGGTCACCCGCTTCTCAGTTTCTGCTCCGTCAAAAACCAGTGTCTCTGCCTCTTCTACCCGAAAACCAGCTCCAGCAACCAAAACCAGAAACCCGAAAGATAAGGAATTTTCCCAAACACTGTTCTTTGAGGATATGGAGGAGACACCCATCAAGAAGAAGAAGAAAAAGAAGGAGAAAAGGAAGAGTGATAAAGTGTGGGTTCACACTCTCCCCGAAGTCTTATACTATCACATTCATAAGAAGAACTGGGCTATTACCCTTGAGTTATTTGGCATGCTTAGAGGGCAACCCTATTACCAACCCAGAGAAGATACTTACATGAGACTCATTGTGTTGCTTGGAAAATCTGGCCAACCACATCGAGCCAATGAGCTTTTTAGCTCTATACATGAAGATGGTTGTGAAAGTACTGAACTTTACACGGCCTTAATTGCAGCCTATTGTCGAAATAATCTTGTTGATGAGGCATTGTCGATTCTTGATGAGATGATGAACATCCCCAATTGCCAGCCTGATATCATAACTTACCTTACCTTGATGGAAGCTCTTGTGGATGCTTTGAAGTTTGAAATGGTTGAGTTGGTGTATGATAAAATGATTGAAAGATCTATCATGCCAAACACTCCTACCCAGAACCTCCTCCTTAGTTGTTATGGTAAGGCTGGGAAGTTTGATCAGATGGAGAAGATAGTGTCAAGTATGATGGAGAGCACTACATGCAAGCCTGATGTTTGGACAATGAACGCGGTCATCAGTGTCTTTCGCGATGAGGGTCTGATTGATCTGATGGAGAAATGGTATGAGAAGTTTTGTAGTTTTGGGATACAACCACAAAGAAGCACTTTTAATATTTTAATGGGAGCTTATAGTAAAAAAAGAATGTATGATAAAATGTCATCAGTTATGCAGTGTATGCACAAGGAAAAATGTCCATGGACAACTCCAACTTACAACTTTGTGATTGAGGCGTTTGCAGATGTAGGTGATGCTGCAAACATGGAACGTGCATATGATCAAATGGTTGCTGAGGGTTTGAAAGCAGATACCAAGACTTTGTGCTGCCTTATCAATGGCTACGCTAAGGCAGGAATCTTCTATAAAGTAATGAGCAGTGTTGTTTTGGCTGAGAAGCTTCAGATACATATGAATACTCCATTTTACAATGCAGTTATATCTGCCTGTGCCAAAGAGGATTCTTTGATTGAAATGGAAAGATTTTTCAAGCGTATGAAAGAAAAAGAATGTCAACCAGATGACACTACATACTCTGTCATGATTGAAGCATACGGAAAAGCAAATATGAATGATAAAATATACTATTTGGAGCAAGAAAAACAGATGATGATATCTGATGAGAAAATTTTGAATGAGCCTCAGTAG 1473 0.3999 MVSMSLCLSSSFIPSPIPHTKFPTAEDPIFRVTRFSVSAPSKTSVSASSTRKPAPATKTRNPKDKEFSQTLFFEDMEETPIKKKKKKKEKRKSDKVWVHTLPEVLYYHIHKKNWAITLELFGMLRGQPYYQPREDTYMRLIVLLGKSGQPHRANELFSSIHEDGCESTELYTALIAAYCRNNLVDEALSILDEMMNIPNCQPDIITYLTLMEALVDALKFEMVELVYDKMIERSIMPNTPTQNLLLSCYGKAGKFDQMEKIVSSMMESTTCKPDVWTMNAVISVFRDEGLIDLMEKWYEKFCSFGIQPQRSTFNILMGAYSKKRMYDKMSSVMQCMHKEKCPWTTPTYNFVIEAFADVGDAANMERAYDQMVAEGLKADTKTLCCLINGYAKAGIFYKVMSSVVLAEKLQIHMNTPFYNAVISACAKEDSLIEMERFFKRMKEKECQPDDTTYSVMIEAYGKANMNDKIYYLEQEKQMMISDEKILNEPQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00429 490 Pfam Pentatricopeptide repeat domain 226 285 IPR002885 -
Vian4g00429 490 Pfam Pentatricopeptide repeat domain 305 356 IPR002885 -
Vian4g00429 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Vian4g00429 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 202 IPR002885 -
Vian4g00429 490 Pfam PPR repeat 136 165 IPR002885 -
Vian4g00429 490 MobiDBLite consensus disorder prediction 38 56 - -
Vian4g00429 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 273 IPR002885 -
Vian4g00429 490 Gene3D Tetratricopeptide repeat domain 298 370 IPR011990 GO:0005515
Vian4g00429 490 Gene3D Tetratricopeptide repeat domain 232 297 IPR011990 GO:0005515
Vian4g00429 490 Gene3D Tetratricopeptide repeat domain 74 231 IPR011990 GO:0005515
Vian4g00429 490 Pfam PPR repeat family 170 215 IPR002885 -
Vian4g00429 490 Pfam PPR repeat family 414 460 IPR002885 -
Vian4g00429 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vian4g00429 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vian4g00429 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vian4g00429 490 Gene3D Tetratricopeptide repeat domain 371 487 IPR011990 GO:0005515
Vian4g00429 490 MobiDBLite consensus disorder prediction 38 63 - -
Vian4g00429 490 PANTHER EXPRESSED PROTEIN 32 475 IPR044179 GO:0003729
Vian4g00429 490 NCBIfam pentatricopeptide repeat 205 239 IPR002885 -
Vian4g00429 490 NCBIfam pentatricopeptide repeat 170 196 IPR002885 -
Vian4g00429 490 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Vian4g00429 490 NCBIfam pentatricopeptide repeat 418 449 IPR002885 -
Vian4g00429 490 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00429 Vian-Chr4 4947561 4949837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00429 126 468 Miscellaneous Gene Families AT4G11690 23.547 1.13e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00429 - - gmx:100776657 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00429 4 4947561 4949837 Vian4g00429 4 4947561 4949837 ECH
Vian1g00400 1 3649891 3652107 Vian4g00429 4 4947561 4949837 PCT