Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00400 ATGGCTTCCCTTTCTCTCTCCTTTTCTTCTTCCATTGTTCCCTCTTCAATTCCTCACCACAAATCCACCAAAATCCACACTCAAGACTCCACTTTTAGGGTTACCTGCTTCGCCATTTCCTCTCCCCCCTCCAAACCCGTTGTCAAAAAGCGACACTGGAAAAAAGGTGAGTTTCCTGGTACTTCCGAAACGTCGTTTGACGATAGTACGAGGAGGACCCCCATCAAGAACATCAAGAGGAAGTTGGAGAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAGTCCTTATCTGAACAAATCGACAAGAAGCAGTGGCTTCAAGCCCTTCAGGTATTTGATATGCTTAGAGAACAAACTTTCTACAAGCCTAAAGAAGGGGCGTATATGAAACTCATTGTGCTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCACCGACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTCATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTCATTGATGAAGCTTTTTCAGTTCTTAATGAGATGAAGAGGCTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGTTATTGTATGAAGAAATGGCTGAAAGGTCCATCACACCAAACACGGTGACTCAGAACATCGTTTTGGGTGGTTATGGTAAGGCGGGGAAGTTTGATCAGATGGAGAAAGTGCTTTCGAGCATGCTGGAGAGCACTACCTGCAAGCCTGATGTTTGGACAATGAACACCATCATTAGTGTCTTTGGTAACAAGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTTGGGATAGAACCTGAAACGCGCACTTTTAACATTTTGATTGGCGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGCAAGTTGCAATTTCCATGGACAACCTCGACCTATAACAATGTGATTGAGGCATTTGCCGATGCTGGTGACGTGAGGCACATGGAGTGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCAGGTCACTTTCATAAAGTAATTAGCAGTGTTCAATTGGCTGGAAAGTTTGAGATACCTGAGAATGTTGCCTTTTATAACGCAGTCTTATCTGCATGTGCAAAGGCAGATGATTTGATGGAAATGGAAAGAGTTTTTAAGCGTATGAAAGATAACCAATGTCAACCGGACGAAACAACATACATGATCATGATTGAAGCATATAGAAAAGACGGTATGAATGACAAAATATACTATTTGGAGCAGGAAAAGCAGACATTGATAACTGACAAAAAAATAGTGAGCCATTCTGAGGATGAGATCTATTGTTCAGATAGCTAA 1482 0.4204 MASLSLSFSSSIVPSSIPHHKSTKIHTQDSTFRVTCFAISSPPSKPVVKKRHWKKGEFPGTSETSFDDSTRRTPIKNIKRKLEKKNSAKAWVNTVTESLSEQIDKKQWLQALQVFDMLREQTFYKPKEGAYMKLIVLLGKSGQPHRAHRLFTTMIEEGLEPTPHLYTALLAAYCRSNLIDEAFSVLNEMKRLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSITPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNKGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDVRHMECTFDQMRAEGMKADTKTFCCLINGYANAGHFHKVISSVQLAGKFEIPENVAFYNAVLSACAKADDLMEMERVFKRMKDNQCQPDETTYMIMIEAYRKDGMNDKIYYLEQEKQTLITDKKIVSHSEDEIYCSDS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00400 493 Pfam PPR repeat family 340 387 IPR002885 -
Vian1g00400 493 Pfam PPR repeat family 409 455 IPR002885 -
Vian1g00400 493 Pfam PPR repeat family 268 315 IPR002885 -
Vian1g00400 493 Pfam PPR repeat family 165 209 IPR002885 -
Vian1g00400 493 Gene3D Tetratricopeptide repeat domain 67 224 IPR011990 GO:0005515
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vian1g00400 493 Gene3D Tetratricopeptide repeat domain 225 360 IPR011990 GO:0005515
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Vian1g00400 493 PANTHER EXPRESSED PROTEIN 29 470 IPR044179 GO:0003729
Vian1g00400 493 MobiDBLite consensus disorder prediction 1 24 - -
Vian1g00400 493 MobiDBLite consensus disorder prediction 1 21 - -
Vian1g00400 493 Gene3D Tetratricopeptide repeat domain 361 488 IPR011990 GO:0005515
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Vian1g00400 493 Pfam PPR repeat 131 159 IPR002885 -
Vian1g00400 493 Pfam PPR repeat 238 263 IPR002885 -
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
Vian1g00400 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 272 303 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 307 335 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 165 192 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 235 270 IPR002885 -
Vian1g00400 493 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00400 Vian-Chr1 3649891 3652107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00400 116 489 Glycosyltransferase AT1G05670 23.873 9.75e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00400 - - gmx:100786610 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00400 1 3649891 3652107 Vian1g00400 1 3649891 3652107 ECH
Vian1g00400 1 3649891 3652107 Vian4g00429 4 4947561 4949837 PCT